Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR2 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 24 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2 9 2
Polaromonas sp. JS666 18 4
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 25 5
Verminephrobacter eiseniae EF01-2 20 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
uxuR2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = 30
score = 5.47591
sequence = CAATTGGCCTTACCACTTG

Gene: Bpro_3963: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -52
score = 5.04502
sequence = GAATTGGCCTTACCACTTG

Gene: Vapar_0787: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
*
Verminephrobacter eiseniae EF01-2

Site:
position = -62
score = 5.14886
sequence = GAATTGGCCTTACCAATTT

Gene: Veis_1542: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
dctP
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3964: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0786: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
 2
Verminephrobacter eiseniae EF01-2

Gene: Veis_1541: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein

Gene: Veis_1540: TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein
dctQ
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3965: TRAP-type C4-dicarboxylate transport system, small permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0785: TRAP-type C4-dicarboxylate transport system, small permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1539: TRAP-type C4-dicarboxylate transport system, small permease component
TRAP-type C4-dicarboxylate transport system, small permease component
dctM
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3966: TRAP-type C4-dicarboxylate transport system, large permease component
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0784: TRAP-type C4-dicarboxylate transport system, large permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1538: TRAP-type C4-dicarboxylate transport system, large permease component
TRAP-type C4-dicarboxylate transport system, large permease component
uxaA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3967: Altronate/Galactarate hydrolase (EC 4.2.1.7)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0783: Altronate/Galactarate hydrolase (EC 4.2.1.7)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1537: Altronate/Galactarate hydrolase (EC 4.2.1.7)
Altronate/Galactarate hydrolase (EC 4.2.1.7)
 
CRON 2.
COG4948
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -131
score = 5.47591
sequence = CAAGTGGTAAGGCCAATTG

Gene: Bpro_3962: Muconate cycloisomerase (EC 5.5.1.1)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_5455: Muconate cycloisomerase (EC 5.5.1.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_2271: Muconate cycloisomerase (EC 5.5.1.1)
Muconate cycloisomerase (EC 5.5.1.1)
Bpro_3961
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3961: 2-keto-3-deoxy-L-fuconate dehydrogenase
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -104
score = 5.04502
sequence = CAAGTGGTAAGGCCAATTC

Gene: Vapar_0788: 2-keto-3-deoxy-L-fuconate dehydrogenase
 
Verminephrobacter eiseniae EF01-2
2-keto-3-deoxy-L-fuconate dehydrogenase
Bpro_3960
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3960: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0789: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0638: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
mhpD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0334: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3959: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3133: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
 
Variovorax paradoxus S110

Gene: Vapar_0790: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1085: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) / 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68)
 
CRON 3.
uxuR3
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -198
score = 3.99195
sequence = AGTTTGGTCTAACCAGCAA

Gene: Bpro_3977: Predicted transcriptional regulator for glucuronate utilization, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -27
score = 5.15066
sequence = AATGTGGTCTAACCAATTT

Gene: Vapar_2876: Predicted transcriptional regulator for glucuronate utilization, GntR family
*
Verminephrobacter eiseniae EF01-2

Site:
position = -25
score = 5.3235
sequence = TAATTGGTCTATCCAATTT

Gene: Veis_3567: Predicted transcriptional regulator for glucuronate utilization, GntR family
Predicted transcriptional regulator for glucuronate utilization, GntR family
Aave_2470
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_2470: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4214: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
 
Rhodoferax ferrireducens DSM 15236
 2
Variovorax paradoxus S110

Gene: Vapar_4767: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor

Gene: Vapar_2877: Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
 
Verminephrobacter eiseniae EF01-2
Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91) # Periplasmic precursor
Vapar_2878
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2878: Amino acid ABC transporter, periplasmic amino acid-binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3566: Amino acid ABC transporter, periplasmic amino acid-binding protein
Amino acid ABC transporter, periplasmic amino acid-binding protein
idnD/tdh
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2879: L-idonate 5-dehydrogenase (EC 1.1.1.264)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3565: L-idonate 5-dehydrogenase (EC 1.1.1.264)
L-idonate 5-dehydrogenase (EC 1.1.1.264)
Vapar_2880
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2880: Amino acid ABC transporter, inner membrane subunit
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3564: Amino acid ABC transporter, inner membrane subunit
Amino acid ABC transporter, inner membrane subunit
Vapar_2881
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2881: Amino acid ABC transporter, inner membrane subunit
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3563: Amino acid ABC transporter, inner membrane subunit
Amino acid ABC transporter, inner membrane subunit
Vapar_2882
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2882: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3562: Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Amino acid transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
Bpro_3978
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3978: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2883: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3561: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein
mtlD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2884: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3560: D-mannonate oxidoreductase (EC 1.1.1.57)
D-mannonate oxidoreductase (EC 1.1.1.57)
Pnap_1486
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2067: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

Gene: Pnap_1486: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Polaromonas sp. JS666

Gene: Bpro_1737: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3414: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_3559: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
Pnap_2074
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -262
score = 4.93394
sequence = TATTTGGTCAGGCCACATT

Site:
position = -248
score = 4.30115
sequence = ACATTGGCCTGACCGAAAG

Site:
position = -107
score = 3.906
sequence = TATACGGTAAGGCCAATCT

Site:
position = -75
score = 5.08167
sequence = AAATTGGCCTTACCAAATA

Gene: Pnap_2074: polar amino acid ABC transporter, inner membrane subunit
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
polar amino acid ABC transporter, inner membrane subunit
Pnap_2073
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2073: polar amino acid ABC transporter, inner membrane subunit
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
polar amino acid ABC transporter, inner membrane subunit
Pnap_2072
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2072: ABC transporter related
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
ABC transporter related
Pnap_2071
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2071: extracellular solute-binding protein, family 3
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
extracellular solute-binding protein, family 3
Pnap_2070
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2070: Alcohol dehydrogenase GroES domain protein
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Alcohol dehydrogenase GroES domain protein
mtlD2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2069: Mannitol dehydrogenase, C-terminal domain
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Mannitol dehydrogenase, C-terminal domain
uxaA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2068: Altronate dehydratase
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Altronate dehydratase
 
CRON 4.
uxuR2-2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -188
score = 5.08167
sequence = TATTTGGTAAGGCCAATTT

Site:
position = -156
score = 3.906
sequence = AGATTGGCCTTACCGTATA

Site:
position = -15
score = 4.30115
sequence = CTTTCGGTCAGGCCAATGT

Site:
position = -1
score = 4.93394
sequence = AATGTGGCCTGACCAAATA

Gene: Pnap_2075: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -165
score = 5.05008
sequence = CTTTTGGCCTTACCAATTT

Site:
position = -151
score = 4.69657
sequence = AATTTGGCGAGGCCACTTT

Site:
position = -36
score = 4.6616
sequence = AAACTGGCATGACCAGATC

Gene: Vapar_5316: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Verminephrobacter eiseniae EF01-2
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
CRON 5.
Vapar_5317
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -157
score = 4.6616
sequence = GATCTGGTCATGCCAGTTT

Site:
position = -42
score = 4.69657
sequence = AAAGTGGCCTCGCCAAATT

Site:
position = -28
score = 5.05008
sequence = AAATTGGTAAGGCCAAAAG

Gene: Vapar_5317: amidohydrolase 2
 
Verminephrobacter eiseniae EF01-2
amidohydrolase 2
Rfer_3129
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3129: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
 
Variovorax paradoxus S110

Gene: Vapar_5318: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1088: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Rfer_3130
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3130: Possible fucose ABC transporter, permease component
 
Variovorax paradoxus S110

Gene: Vapar_5319: Possible fucose ABC transporter, permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1087: Possible fucose ABC transporter, permease component
Possible fucose ABC transporter, permease component
Rfer_3131
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3131: Possible fucose ABC transporter, substrate-binding component
 
Variovorax paradoxus S110

Gene: Vapar_5320: Possible fucose ABC transporter, substrate-binding component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1086: Possible fucose ABC transporter, substrate-binding component
Possible fucose ABC transporter, substrate-binding component
Rfer_3134
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3134: L-fuconate dehydratase (EC 4.2.1.68)
 
Variovorax paradoxus S110

Gene: Vapar_5321: L-fuconate dehydratase (EC 4.2.1.68)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1084: L-fuconate dehydratase (EC 4.2.1.68)
L-fuconate dehydratase (EC 4.2.1.68)
Rfer_3136
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3136: SDR dehydrogenase clustered with L-fuconate utilization genes
 
Variovorax paradoxus S110

Gene: Vapar_5322: SDR dehydrogenase clustered with L-fuconate utilization genes
 
Verminephrobacter eiseniae EF01-2
SDR dehydrogenase clustered with L-fuconate utilization genes
Rfer_3138
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3138: Possible alternative L-fucose mutarotase
 
Variovorax paradoxus S110

Gene: Vapar_5323: Possible alternative L-fucose mutarotase
 
Verminephrobacter eiseniae EF01-2
Possible alternative L-fucose mutarotase
 
CRON 6.
uxuR2-3
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
*
Verminephrobacter eiseniae EF01-2

Site:
position = -38
score = 4.86503
sequence = CGATTGGCCTGACCATTGA

Gene: Veis_0743: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
argE
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_0411: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3755: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0744: Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (EC 3.5.1.16)
ddpA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0745: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
dppB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0746: Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
Putative polyamine transporter; Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1)
dppC
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0747: Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
Putative polyamine transporter; Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
 
CRON 7.
Bpro_3976
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -161
score = 3.99195
sequence = TTGCTGGTTAGACCAAACT

Gene: Bpro_3976: ABC transporter amino acid-binding protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
ABC transporter amino acid-binding protein
Bpro_3975
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3975: amino acid ABC transporter, permease protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
amino acid ABC transporter, permease protein
Bpro_3974
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3974: amino acid ABC transporter, permease protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
amino acid ABC transporter, permease protein
Bpro_3973
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3973: Glutamine transport ATP-binding protein glnQ
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Glutamine transport ATP-binding protein glnQ
COG2055
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3972: Malate dehydrogenase (EC 1.1.1.37)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2575: Malate dehydrogenase (EC 1.1.1.37)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4538: Malate dehydrogenase (EC 1.1.1.37)
Malate dehydrogenase (EC 1.1.1.37)
COG2706
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_1490: 3-carboxymuconate cyclase
 
Polaromonas sp. JS666

Gene: Bpro_3971: 3-carboxymuconate cyclase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_3646: 3-carboxymuconate cyclase
 
Verminephrobacter eiseniae EF01-2
3-carboxymuconate cyclase
uxuA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3970: D-mannonate oxidoreductase (EC 1.1.1.57)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
D-mannonate oxidoreductase (EC 1.1.1.57)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD