Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog UxuR2 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 23 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 9 2
Burkholderia glumae BGR1 12 3
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 17 5
Burkholderia pseudomallei K96243
Burkholderia sp. 383
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Bphy_5157
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -117
score = 3.5801
sequence = TCGGTGGCCTGACCAAAAC

Site:
position = -98
score = 3.81893
sequence = CGATTGGCCTGACCGCAGC

Gene: Bphy_5157: putative simple sugar transport system substrate-binding protein
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
putative simple sugar transport system substrate-binding protein
mglA
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5158: ABC transporter related
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
ABC transporter related
Bphy_5159
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5159: inner-membrane translocator
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
inner-membrane translocator
Bphy_5160
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5160: inner-membrane translocator
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
inner-membrane translocator
COG3386
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5161: gluconolactonase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
gluconolactonase
Bphy_5162
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5162: putative ABC transporter
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
putative ABC transporter
 
CRON 2.
bglu_2g15460
 
Burkholderia cepacia AMMD
*
Burkholderia glumae BGR1

Site:
position = -53
score = 4.49934
sequence = CCACTGGTCCGGCCAATTC

Gene: bglu_2g15460: Short-chain dehydrogenase/reductase SDR
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Short-chain dehydrogenase/reductase SDR
mhpD
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1

Gene: bglu_2g15470: 5-carboxymethyl-2-hydroxymuconate delta-isomerase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
5-carboxymethyl-2-hydroxymuconate delta-isomerase
uxuR2-2
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1

Gene: bglu_2g15480: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
CRON 3.
uhpC
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -261
score = 4.89704
sequence = AAAGTGGCTTGACCACTGG

Site:
position = -220
score = 4.54515
sequence = AATCTGGTAAGACCACATA

Gene: Bphy_5154: Probable glucarate transporter
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B1357: Probable glucarate transporter
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Probable glucarate transporter
uxaA
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5155: Altronate dehydratase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Altronate dehydratase
idi
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_5156: L-lactate dehydrogenase (cytochrome)
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
L-lactate dehydrogenase (cytochrome)
 
CRON 4.
uxuR2
*
Burkholderia cepacia AMMD

Site:
position = -84
score = 3.98273
sequence = GAAGTGACCATACCAATGG

Site:
position = -113
score = 5.37392
sequence = CATCTGGTCAAGCCAATTG

Site:
position = -156
score = 5.61569
sequence = CAACTGGCCAGTCCAGTTG

Gene: Bamb_1229: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
*
Burkholderia glumae BGR1

Site:
position = -127
score = 4.53717
sequence = TAATGGGTCTTACCAATAG

Site:
position = -198
score = 4.30565
sequence = GCGCTGGTCAGTCCAATTG

Site:
position = -155
score = 5.04899
sequence = AATTTGGTCAAGCCAATAT

Gene: bglu_2g18460: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -198
score = 5.04215
sequence = CGCGTGGTCAGTCCAATTG

Site:
position = -155
score = 4.82055
sequence = CGTTTGGTCAAGCCAGTAT

Gene: Bphy_6346: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
CRON 5.
uxuR3-3
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -201
score = 4.54515
sequence = TATGTGGTCTTACCAGATT

Site:
position = -160
score = 4.89704
sequence = CCAGTGGTCAAGCCACTTT

Gene: Bphy_5153: Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Predicted transcriptional regulator for glucuronate/galacturonate utilization, GntR family
 
CRON 6.
mglA
*
Burkholderia cepacia AMMD

Site:
position = -129
score = 3.98273
sequence = CCATTGGTATGGTCACTTC

Site:
position = -100
score = 5.37392
sequence = CAATTGGCTTGACCAGATG

Site:
position = -57
score = 5.61569
sequence = CAACTGGACTGGCCAGTTG

Gene: Bamb_1228: sugar ABC transporter, ATP-binding component
*
Burkholderia glumae BGR1

Site:
position = -122
score = 4.53717
sequence = CTATTGGTAAGACCCATTA

Site:
position = -94
score = 5.04899
sequence = ATATTGGCTTGACCAAATT

Site:
position = -51
score = 4.30565
sequence = CAATTGGACTGACCAGCGC

Gene: bglu_2g18470: sugar ABC transporter, ATP-binding component
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -93
score = 4.82055
sequence = ATACTGGCTTGACCAAACG

Site:
position = -50
score = 5.04215
sequence = CAATTGGACTGACCACGCG

Gene: Bphy_6345: sugar ABC transporter, ATP-binding component
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
sugar ABC transporter, ATP-binding component
Bamb_1227
 
Burkholderia cepacia AMMD

Gene: Bamb_1227: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g18480: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_6344: sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
sugar ABC transport system, permease protein RbsC (TC 3.A.1.2.1)
Bamb_1226
 
Burkholderia cepacia AMMD

Gene: Bamb_1226: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
 
Burkholderia glumae BGR1

Gene: bglu_2g18490: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_6343: sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
sugar ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
tas
 
Burkholderia cepacia AMMD

Gene: Bamb_1225: L-fuco-beta-pyranose dehydrogenase
 
Burkholderia glumae BGR1

Gene: bglu_2g18500: L-fuco-beta-pyranose dehydrogenase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_6342: L-fuco-beta-pyranose dehydrogenase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
L-fuco-beta-pyranose dehydrogenase
COG3618
 
Burkholderia cepacia AMMD

Gene: Bamb_1224: Amidohydrolase 2
 
Burkholderia glumae BGR1

Gene: bglu_2g18510: Amidohydrolase 2
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Amidohydrolase 2
tdh
 
Burkholderia cepacia AMMD

Gene: Bamb_1223: Alcohol dehydrogenase GroES-like
 
Burkholderia glumae BGR1

Gene: bglu_2g18520: Alcohol dehydrogenase GroES-like
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_6341: Alcohol dehydrogenase GroES-like
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Alcohol dehydrogenase GroES-like
uxaB
 
Burkholderia cepacia AMMD

Gene: Bamb_1222: Altronate oxidoreductase
 
Burkholderia glumae BGR1

Gene: bglu_2g18530: Altronate oxidoreductase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_6340: Altronate oxidoreductase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Altronate oxidoreductase
uxaA
 
Burkholderia cepacia AMMD

Gene: Bamb_1221: Altronate hydrolase (EC 4.2.1.7)
 
Burkholderia glumae BGR1

Gene: bglu_2g18540: Altronate hydrolase (EC 4.2.1.7)
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Altronate hydrolase (EC 4.2.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD