Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Clostridia-3

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 21 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacteroides pectinophilus ATCC 43243 1 1
Blautia hansenii DSM 20583 1 1
Bryantella formatexigens DSM 14469 1 1
Clostridiales bacterium 1_7_47_FAA 3 2
Clostridium bolteae ATCC BAA-613 3 2
Clostridium nexile DSM 1787 2 1
Clostridium scindens ATCC 35704 3 2
Dorea formicigenerans ATCC 27755 2 1
Dorea longicatena DSM 13814 4 3
Eubacterium eligens ATCC 27750 2 1
Eubacterium rectale ATCC 33656 1 1
Roseburia intestinalis L1-82 3 1
Ruminococcus gnavus ATCC 29149 3 2
Ruminococcus lactaris ATCC 29176 3 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ROSINTL182_03667
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Dorea formicigenerans ATCC 27755
 
Dorea longicatena DSM 13814
 
Eubacterium eligens ATCC 27750
 
Eubacterium rectale ATCC 33656
*
Roseburia intestinalis L1-82

Site:
position = -7
score = 11.9189
sequence = AACTGGCAT-(15)-AACTGGATG-(8)-CATCCAGTT

Gene: ROSINTL182_03667: hypothetical protein
 
Ruminococcus gnavus ATCC 29149
 
Ruminococcus lactaris ATCC 29176
hypothetical protein
pdxS
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
*
Dorea formicigenerans ATCC 27755

Site:
position = -141
score = 12.2906
sequence = AACTGGCTT-(15)-AACTGGATA-(8)-ATACCAGTT

Gene: DORFOR_02364: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Dorea longicatena DSM 13814

Site:
position = -56
score = 12.0638
sequence = AACTGGTAT-(15)-AACTGGATG-(8)-ATACCAGAT

Gene: DORLON_00259: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Eubacterium eligens ATCC 27750

Site:
position = -106
score = 12.0483
sequence = TTCTGGCAT-(15)-AATTGGATA-(8)-TGACCAGTT

Gene: EUBELI_20439: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_2951: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Roseburia intestinalis L1-82

Gene: ROSINTL182_03666: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Ruminococcus gnavus ATCC 29149

Site:
position = -101
score = 11.5154
sequence = AACTGGCAT-(15)-AACTGGATG-(8)-AAGCCAATC

Gene: RUMGNA_01775: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Ruminococcus lactaris ATCC 29176

Site:
position = -132
score = 10.3666
sequence = TTCTGACCT-(15)-AATTGAATA-(8)-TAGTCACAA

Gene: RUMLAC_01874: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT
 
Bacteroides pectinophilus ATCC 43243
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469
 
Clostridiales bacterium 1_7_47_FAA
 
Clostridium bolteae ATCC BAA-613
 
Clostridium nexile DSM 1787
 
Clostridium scindens ATCC 35704
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_02363: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Dorea longicatena DSM 13814

Gene: DORLON_00260: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_20440: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_2952: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Roseburia intestinalis L1-82

Gene: ROSINTL182_03665: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Ruminococcus gnavus ATCC 29149

Gene: RUMGNA_01774: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
Ruminococcus lactaris ATCC 29176

Gene: RUMLAC_01875: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)
 
CRON 2.
pdxK
 
Bacteroides pectinophilus ATCC 43243

Gene: BACPEC_02722: Pyridoxal kinase (EC 2.7.1.35)
 
Blautia hansenii DSM 20583
 
Bryantella formatexigens DSM 14469

Gene: BRYFOR_04365: Pyridoxal kinase (EC 2.7.1.35)
 2
Clostridiales bacterium 1_7_47_FAA

Gene: Cbac1_010100014735: Pyridoxal kinase (EC 2.7.1.35)

Gene: Cbac1_010100001360: Pyridoxal kinase (EC 2.7.1.35)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04693: Pyridoxal kinase (EC 2.7.1.35)
 2
Clostridium nexile DSM 1787

Gene: CLONEX_00361: Pyridoxal kinase (EC 2.7.1.35)

Gene: CLONEX_01624: Pyridoxal kinase (EC 2.7.1.35)
*
Clostridium scindens ATCC 35704

Site:
position = -199
score = 10.1202
sequence = AACTGGCCT-(15)-ATCTGGACT-(8)-CATCCACTT

Gene: CLOSCI_00017: Pyridoxal kinase (EC 2.7.1.35)
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_02568: Pyridoxal kinase (EC 2.7.1.35)
 2
Dorea longicatena DSM 13814

Gene: DORLON_00568: Pyridoxal kinase (EC 2.7.1.35)

Gene: DORLON_02260: Pyridoxal kinase (EC 2.7.1.35)
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_01355: Pyridoxal kinase (EC 2.7.1.35)
 
Eubacterium rectale ATCC 33656

Gene: EUBREC_0323: Pyridoxal kinase (EC 2.7.1.35)
 
Roseburia intestinalis L1-82
 
Ruminococcus gnavus ATCC 29149

Gene: RUMGNA_03080: Pyridoxal kinase (EC 2.7.1.35)
 
Ruminococcus lactaris ATCC 29176

Gene: RUMLAC_00794: Pyridoxal kinase (EC 2.7.1.35)
Pyridoxal kinase (EC 2.7.1.35)
pdxU
*
Bacteroides pectinophilus ATCC 43243

Site:
position = -60
score = 9.34414
sequence = ATCTGGTAT-(15)-AACTGGCAT-(8)-TTGCCACAT

Gene: BACPEC_01644: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*
Blautia hansenii DSM 20583

Site:
position = -97
score = 10.9124
sequence = AACTGGACT-(15)-AACTGGCTA-(8)-TAGCCAGTT

Gene: BLAHAN_01809: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*
Bryantella formatexigens DSM 14469

Site:
position = -125
score = 10.0426
sequence = AACTGGACT-(15)-AACTGGACA-(8)-TATCCGGAT

Gene: BRYFOR_03586: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Clostridiales bacterium 1_7_47_FAA

Site:
position = -133
score = 10.3039
sequence = AACTGGACT-(15)-AACTGGATA-(8)-ACTCCACTC

Gene: Cbac1_010100001365: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Site:
position = -182
score = 10.4653
sequence = AAGTGGACT-(15)-AACTGGATA-(8)-AGTCCACTT

Gene: Cbac1_010100020035: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Clostridium bolteae ATCC BAA-613

Site:
position = -124
score = 11.384
sequence = AACTGGACT-(15)-AACTGGATA-(8)-ATTCCACTT

Gene: CLOBOL_04694: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Site:
position = -104
score = 10.4081
sequence = ATCTGGACT-(15)-AACTGGATA-(8)-AGTCCACCT

Gene: CLOBOL_05306: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Clostridium nexile DSM 1787

Site:
position = -97
score = 9.37632
sequence = AACTGGACT-(15)-AACTGGTAT-(8)-ATACCAGAA

Gene: CLONEX_02290: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Gene: CLONEX_02289: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Clostridium scindens ATCC 35704

Site:
position = -95
score = 10.8696
sequence = AACTGGACT-(15)-AACTGGACA-(8)-TGACCACTT

Gene: CLOSCI_02639: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Gene: CLOSCI_00016: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
 
Dorea formicigenerans ATCC 27755

Gene: DORFOR_03143: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Dorea longicatena DSM 13814

Site:
position = -142
score = 10.8121
sequence = AACTGGCCT-(15)-AACTGGCTG-(8)-CATCCACTT

Gene: DORLON_01651: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Site:
position = -63
score = 10.2113
sequence = AACTGGTAT-(15)-AACTGGCTC-(8)-ATGCCACTA

Gene: DORLON_00405: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
 
Eubacterium eligens ATCC 27750

Gene: EUBELI_01125: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*2
Eubacterium rectale ATCC 33656

Site:
position = -170
score = 10.5529
sequence = AACTGGATA-(15)-AATTGGATA-(8)-ATGCCACAT

Gene: EUBREC_0262: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter

Gene: EUBREC_0322: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
 
Roseburia intestinalis L1-82
*
Ruminococcus gnavus ATCC 29149

Site:
position = -75
score = 10.8696
sequence = AACTGGACT-(15)-AACTGGACA-(8)-TATCCACTT

Gene: RUMGNA_02238: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
*
Ruminococcus lactaris ATCC 29176

Site:
position = -93
score = 8.79778
sequence = ATCTGACCT-(15)-AATTGACCA-(8)-GGTTCACAT

Gene: RUMLAC_01106: Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
Substrate-specific component PdxU of predicted pyridoxin-related ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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