Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Magnetospirillum magneticum AMB-1 1 1
Magnetospirillum magnetotacticum MS-1 1 1
Rhodospirillum centenum SW
Rhodospirillum rubrum ATCC 11170
Azospirillum sp. B510
Acetobacter pasteurianus IFO 3283-01
Gluconacetobacter diazotrophicus PAl 5
Gluconobacter oxydans 621H
Granulibacter bethesdensis CGDNIH1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Magnetospirillum magneticum AMB-1

Site:
position = -241
score = 14.4765
sequence = AAGTGGCTC-(14)-AAGTGGATC-(8)-GAGCCACTT

Gene: amb1377: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Magnetospirillum magnetotacticum MS-1

Site:
position = -84
score = 14.4765
sequence = AAGTGGCTC-(14)-AACTGGGCC-(8)-GAACCGCTT

Gene: Magn03008367: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Rhodospirillum centenum SW
 
Rhodospirillum rubrum ATCC 11170
 
Azospirillum sp. B510

Gene: AZL_a00360: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconacetobacter diazotrophicus PAl 5
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD