Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Veis_4721 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
potD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_3886: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3222: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
 
Variovorax paradoxus S110
*2
Verminephrobacter eiseniae EF01-2

Gene: Veis_4497: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)

Site:
position = -147
score = 11.0458
sequence = AAATGGACTG-(13)-AAATGGGTAT-(6)-CAAGCCACTG

Gene: Veis_4498: ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD