Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bpet3338 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50
Bordetella petrii DSM 12804 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Bpet3338
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -77
score = 9.23229
sequence = AGGTACAGT-(18)-ACTGTCCCA

Gene: Bpet3338: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
CRON 2.
fcbT1
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -133
score = 9.23229
sequence = TGGGACAGT-(18)-ACTGTACCT

Gene: Bpet3339: TRAP transporter periplasmic mannitol-binding protein
TRAP transporter periplasmic mannitol-binding protein
fcbT2
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3340: TRAP-type dicarboxylat transporter, small permease component
TRAP-type dicarboxylat transporter, small permease component
fcbT3
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3341: TRAP-type dicarboxylat transporter, large component
TRAP-type dicarboxylat transporter, large component
mvaA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet3342: 3-hydroxy-3-methylglutaryl-coenzyme A reductase
3-hydroxy-3-methylglutaryl-coenzyme A reductase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD