Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92 1 1
Reinekea sp. MED297
Marinobacter aqueolei 1 1
Marinobacter sp. ELB17
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043
 
Hahella chejuensis KCTC 2396

Gene: HCH_01885: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0086: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Oceanobacter sp. RED65
*
Oceanospirillum sp. MED92

Site:
position = -94
score = 12.0666
sequence = AACTGGGCCCAT-(12)-TATTGGATCTTT-(0)-TATAGACCTAAT

Gene: MED92_15488: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Reinekea sp. MED297
*
Marinobacter aqueolei

Site:
position = -101
score = 12.1167
sequence = CACTGGTCCTAT-(11)-ATCTGGGTCTTT-(2)-AGGGTATCAGAA

Gene: Maqu_2952: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Marinobacter sp. ELB17
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD