Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255 2 1
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00596
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
*
Nitrobacter winogradskyi Nb-255

Site:
position = -263
score = 14.1963
sequence = ACCGGCCTA-(14)-ACTGGCACT-(6)-TAGGCCGGT

Gene: Nwi_0882: class II aldolase/adducin
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
class II aldolase/adducin
PF00701
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu0899: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_2692: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099

Gene: mll6376: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_0883: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Rhizobium etli CFN 42

Gene: RHE_CH02792: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3247: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Rhizobium sp. NGR234

Gene: NGR_b00160: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb21508: Dihydrodipicolinate synthase (EC 4.2.1.52)
 
Xanthobacter autotrophicus Py2
Dihydrodipicolinate synthase (EC 4.2.1.52)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD