Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1 1 1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5 2 2
Pseudomonas mendocina ymp
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Azotobacter vinelandii AvOP
*
Pseudomonas aeruginosa PAO1

Site:
position = -133
score = 13.0204
sequence = AAATGGTCTG-(13)-AATTGGTGGG-(6)-CAAGCCATTA

Gene: PA4166: acetyltransferase, GNAT family
 
Pseudomonas entomophila L48
*
Pseudomonas fluorescens Pf-5

Site:
position = -118
score = 9.38494
sequence = AAGTGGTCTG-(13)-AATTGGCCTG-(6)-TCCGCCACTC

Gene: PFL_2438: acetyltransferase, GNAT family
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
acetyltransferase, GNAT family
 
CRON 2.
PF03594
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
*
Pseudomonas fluorescens Pf-5

Site:
position = -116
score = 10.1419
sequence = AAGTGGTCTG-(13)-ATGTGGCTCG-(6)-TAGTCCATCC

Gene: PFL_0755: Putative pyridoxine transport protein
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440

Gene: PP2035: Putative pyridoxine transport protein
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Putative pyridoxine transport protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD