Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BAV2320 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 3 3
Bordetella bronchiseptica RB50 1 1
Bordetella petrii DSM 12804 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
BAV2320
*
Bordetella avium 197N

Site:
position = -119
score = 14.7825
sequence = ACAGTCACACGCCA-(11)-GACACAACAGACGG-(8)-CGTTCTGTTATGGT-(11)-TAGCCTGTGTCTGT

Gene: BAV2320: Transcriptional regulator, GntR family
 
Bordetella bronchiseptica RB50

Gene: BB2054: Transcriptional regulator, GntR family
*
Bordetella petrii DSM 12804

Site:
position = -119
score = 14.1538
sequence = ACAGACACACCGTT-(11)-ACCGCAACAGACAA-(8)-TCATCTGTTATGGT-(11)-AGAACTGTGCCTTA

Gene: Bpet2044: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
 
CRON 2.
BAV2319
*
Bordetella avium 197N

Site:
position = -118
score = 18.264
sequence = ACAGACACAGGCTA-(11)-ACCATAACAGAACG-(8)-CCGTCTGTTGTGTC-(11)-TGGCGTGTGACTGT

Gene: BAV2319: hypothetical protein
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804
hypothetical protein
 
CRON 3.
BAV2318
*
Bordetella avium 197N

Site:
position = -683
score = 18.264
sequence = ACAGACACAGGCTA-(11)-ACCATAACAGAACG-(8)-CCGTCTGTTGTGTC-(11)-TGGCGTGTGACTGT

Gene: BAV2318: hypothetical protein
*
Bordetella bronchiseptica RB50

Site:
position = -732
score = 19.4059
sequence = ACAGGCACAGTTGT-(11)-ACCATAACAGAGTT-(8)-AGATCTGTATCGAT-(11)-GTTGCTGTGCCTGT

Gene: BB2055: hypothetical protein
*
Bordetella petrii DSM 12804

Site:
position = -666
score = 18.0994
sequence = TAAGGCACAGTTCT-(11)-ACCATAACAGATGA-(8)-TTGTCTGTTGCGGT-(11)-AACGGTGTGTCTGT

Gene: Bpet2046: hypothetical protein
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD