Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog H16_A0970 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 2 2
Ralstonia eutropha H16 3 3
Ralstonia eutropha JMP134 2 2
Ralstonia metallidurans CH34 1 1
Ralstonia pickettii 12J 1 1
Ralstonia solanacearum GMI1000 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
h16_A0971
*
Cupriavidus taiwanensis

Site:
position = -142
score = 19.8873
sequence = ACAGATACAGAGGC-(11)-ATCGTAACAGGCGG-(8)-GTTGCTGTTCCGGT-(11)-GGCCGTGTGCCTGC

Gene: RALTA_A0964: hypothetical protein
*
Ralstonia eutropha H16

Site:
position = -143
score = 20.04
sequence = ACAGATACAGAAGC-(11)-ATCGTAACAGGGCT-(8)-ATGGCTGTTCCGGT-(11)-CGCGGTGTGCCTGC

Gene: H16_A0971: hypothetical protein
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
hypothetical protein
 
CRON 2.
RSc0598
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16
 
Ralstonia eutropha JMP134
 
Ralstonia metallidurans CH34
*
Ralstonia pickettii 12J

Site:
position = -136
score = 19.4648
sequence = ACAGATACAGACGA-(11)-ACCGCAACAGATTG-(10)-ATGCCTGTTGCGCC-(10)-AGTTCTGTGTCTGT

Gene: Rpic_0527: hypothetical protein
*
Ralstonia solanacearum GMI1000

Site:
position = -137
score = 20.4905
sequence = ACAGATACAGACGG-(11)-ACCGTAACAGATGA-(10)-TGCCCTGCTCTGGT-(10)-ACGTCTGTGTCTGT

Gene: RS04847: hypothetical protein
hypothetical protein
 
CRON 3.
h16_A0972
*
Cupriavidus taiwanensis

Site:
position = -581
score = 19.8873
sequence = ACAGATACAGAGGC-(11)-ATCGTAACAGGCGG-(8)-GTTGCTGTTCCGGT-(11)-GGCCGTGTGCCTGC

Gene: RALTA_A0965: putative FAD dependent oxidoreductase
*
Ralstonia eutropha H16

Site:
position = -582
score = 20.04
sequence = ACAGATACAGAAGC-(11)-ATCGTAACAGGGCT-(8)-ATGGCTGTTCCGGT-(11)-CGCGGTGTGCCTGC

Gene: H16_A0972: putative FAD dependent oxidoreductase
*
Ralstonia eutropha JMP134

Site:
position = -631
score = 20.5357
sequence = ACAGATACAGACGG-(11)-ATCGTAACAGACAG-(8)-TGCACTGTTCCGGT-(11)-TCTGTTGTGGCTGT

Gene: Reut_A2459: putative FAD dependent oxidoreductase
*
Ralstonia metallidurans CH34

Site:
position = -549
score = 20.5699
sequence = ACAGATACAGATGC-(11)-ATCGTAACAGGGCG-(8)-ACATCTGTTCTGGT-(11)-TGGCTTGTGCCTGT

Gene: Rmet_0869: putative FAD dependent oxidoreductase
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
putative FAD dependent oxidoreductase
 
CRON 4.
H16_A0970
 
Cupriavidus taiwanensis

Gene: RALTA_A0963: Transcriptional regulator, GntR family
*
Ralstonia eutropha H16

Site:
position = -119
score = 14.3191
sequence = GCAGGCACACCGCG-(11)-ACCGGAACAGCCAT-(8)-AGCCCTGTTACGAT-(11)-GCTTCTGTATCTGT

Gene: H16_A0970: Transcriptional regulator, GntR family
*
Ralstonia eutropha JMP134

Site:
position = -118
score = 15.5715
sequence = ACAGCCACAACAGA-(11)-ACCGGAACAGTGCA-(8)-CTGTCTGTTACGAT-(11)-CCGTCTGTATCTGT

Gene: Reut_A2460: Transcriptional regulator, GntR family
 
Ralstonia metallidurans CH34

Gene: Rmet_0868: Transcriptional regulator, GntR family
 
Ralstonia pickettii 12J

Gene: Rpic_0528: Transcriptional regulator, GntR family
 
Ralstonia solanacearum GMI1000

Gene: RS04846: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD