Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Aave_3430 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 2 2
Acidovorax sp. JS42
Comamonas testosteroni KF-1 2 2
Delftia acidovorans SPH-1 2 2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2 2 2
Polaromonas sp. JS666 2 2
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 2 2
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
CtesDRAFT_5133
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -102
score = 19.1635
sequence = ACAGATACAGATTG-(11)-AGCAGAACAGATAC-(9)-CGCGCTGCTACGCC-(11)-GTTGCTGTGCCTGT

Gene: CtesDRAFT_5133: hypothetical protein
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 2.
Aave_3431
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -151
score = 19.9735
sequence = ACAGATACAGACAG-(11)-ACCATAACAGAGGC-(9)-CGCACTGTTCTCCT-(11)-CCGCCTGTGCCTGC

Gene: Aave_3431: hypothetical protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 3.
Pnap_3430
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -148
score = 20.9371
sequence = ACAGATACAGCCGA-(11)-ACCATAACAGATGC-(9)-ACGCCTGTTCCGGT-(11)-CGGGCTGTGGCTGT

Gene: Pnap_3430: hypothetical protein
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 4.
Vapar_0984
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -140
score = 21.3672
sequence = ACAGATGCAGTTGC-(11)-ACCATAACAGATGC-(9)-ACCGCTGTTCCGGT-(11)-GGGTGTGTGCCTGT

Gene: Vapar_0984: hypothetical protein
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 5.
Bpro_2662
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -130
score = 18.292
sequence = ACAGCCACAGATGG-(11)-ACCATAACAGATGG-(8)-CCATCTGTACCGAT-(11)-TTGATTGCCTCTGT

Gene: Bpro_2662: hypothetical protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
 
CRON 6.
Aave_3430
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -161
score = 14.6389
sequence = GCAGGCACAGGCGG-(11)-AGGAGAACAGTGCG-(9)-GCCTCTGTTATGGT-(11)-CTGTCTGTATCTGT

Gene: Aave_3430: Transcriptional regulator, GntR family
 
Acidovorax sp. JS42
*
Comamonas testosteroni KF-1

Site:
position = -108
score = 13.5339
sequence = ACAGGCACAGCAAC-(11)-GGCGTAGCAGCGCG-(9)-GTATCTGTTCTGCT-(11)-CAATCTGTATCTGT

Gene: CtesDRAFT_4867: Transcriptional regulator, GntR family
*
Delftia acidovorans SPH-1

Site:
position = -157
score = 12.9936
sequence = ACAGGCACAGCCCG-(11)-ATCGCAGCAGTGCA-(9)-GGATCTGTTGTGCT-(11)-GGATCTGTATCTGT

Gene: Daci_5367: Transcriptional regulator, GntR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -118
score = 16.1933
sequence = ACAGCCACAGCCCG-(11)-ACCGGAACAGGCGT-(9)-GCATCTGTTATGGT-(11)-TCGGCTGTATCTGT

Gene: Pnap_3431: Transcriptional regulator, GntR family
*
Polaromonas sp. JS666

Site:
position = -137
score = 15.368
sequence = ACAGAGGCAATCAA-(11)-ATCGGTACAGATGG-(8)-CCATCTGTTATGGT-(11)-CCATCTGTGGCTGT

Gene: Bpro_2661: Transcriptional regulator, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -120
score = 14.2479
sequence = ACAGGCACACACCC-(11)-ACCGGAACAGCGGT-(9)-GCATCTGTTATGGT-(11)-GCAACTGCATCTGT

Gene: Vapar_0983: Transcriptional regulator, GntR family
 
Verminephrobacter eiseniae EF01-2
Transcriptional regulator, GntR family
 
CRON 7.
Daci_5368
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = 35
score = 18.0967
sequence = ACAGATACAGATCC-(11)-AGCACAACAGATCC-(9)-TGCACTGCTGCGAT-(11)-CGGGCTGTGCCTGT

Gene: Daci_5368: hypothetical protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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