Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog sll5086 - Cyanobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Cyanobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Microcystis aeruginosa NIES-843
Nostoc sp. PCC 7120
Trichodesmium erythraeum IMS101
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8801
Gloeobacter violaceus PCC 7421
Synechococcus elongatus PCC 7942 1 1
Synechococcus sp. PCC 7002
Synechocystis sp. PCC 6803 1 1
Prochlorococcus marinus str. MIT 9313
Thermosynechococcus elongatus BP-1
Synechococcus sp. JA-3-3Ab
Synechococcus sp. WH 8102
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF10025
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Cyanothece sp. ATCC 51142

Gene: cce_4458: hypothetical protein
 
Cyanothece sp. PCC 7425
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
 
Synechococcus elongatus PCC 7942
 
Synechococcus sp. PCC 7002
*
Synechocystis sp. PCC 6803

Site:
position = -576
score = 16.4664
sequence = ACAGTT-(19)-ACAGTT-(11)-AACTGT-(7)-ACAATT

Gene: slr5087: hypothetical protein
 
Prochlorococcus marinus str. MIT 9313
 
Thermosynechococcus elongatus BP-1
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
hypothetical protein
 
CRON 2.
Cyan7425_2936
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_2936: hypothetical protein
 
Cyanothece sp. PCC 8801
 
Gloeobacter violaceus PCC 7421
*
Synechococcus elongatus PCC 7942

Site:
position = -201
score = 16.124
sequence = ACAGTT-(19)-ACAGTT-(11)-AACTGT-(7)-GCAATT

Gene: Synpcc7942_1724: hypothetical protein
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Prochlorococcus marinus str. MIT 9313
 
Thermosynechococcus elongatus BP-1
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD