Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NmlR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: activator
Biological process: Carbonyl stress response
Effector: Diamide
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 1 1
Shewanella putrefaciens CN-32
Shewanella sp W3-18-1
Shewanella sp ANA-3
Shewanella sp MR-4 1 1
Shewanella sp MR-7
Shewanella baltica OS155 1 1
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400 1 1
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella pealeana ATCC 700345
Shewanella halifaxensis HAW-EB4
Shewanella piezotolerans WP3
Shewanella sediminis HAW-EB3
Shewanella woodyi ATCC 51908 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pcaC
*
Shewanella oneidensis MR-1

Site:
position = -60
score = 6.81782
sequence = CTTAGAGCTAACTCTAAG

Gene: SO_0083: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
*
Shewanella sp MR-4

Site:
position = -57
score = 6.81782
sequence = CTTAGAGTGAACTCTAAG

Gene: Shewmr4_0089: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
 
Shewanella sp MR-7
*
Shewanella baltica OS155

Site:
position = -58
score = 7.12785
sequence = CTTAGAGTTAACTCTAAG

Gene: Sbal_4266: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -58
score = 6.81782
sequence = CTTAGAGTTAACTCTAAC

Gene: Sfri_3873: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -57
score = 7.12785
sequence = CTTAGAGTTAACTCTAAG

Gene: Swoo_4049: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD