Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW2 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alcanivorax borkumensis SK2
Chromohalobacter salexigens DSM 3043 3 1
Hahella chejuensis KCTC 2396
Marinomonas sp. MWYL1
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Reinekea sp. MED297
Marinobacter aqueolei
Marinobacter sp. ELB17
Teredinibacter turnerae T7901
Saccharophagus degradans 2-40
Cellvibrio japonicus Ueda107
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Alcanivorax borkumensis SK2
*
Chromohalobacter salexigens DSM 3043

Site:
position = -94
score = 12.3062
sequence = ACTGGTTCCCC-(13)-ACTGGTTCTTC-(2)-GGGGAACCATT

Gene: Csal_1153: GCN5-related N-acetyltransferase domain
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Cellvibrio japonicus Ueda107
GCN5-related N-acetyltransferase domain
PF00583
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1154: GCN5-related N-acetyltransferase domain
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1
 
Oceanobacter sp. RED65
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901
 
Saccharophagus degradans 2-40
 
Cellvibrio japonicus Ueda107
GCN5-related N-acetyltransferase domain
pdxO2
 
Alcanivorax borkumensis SK2
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_1155: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Hahella chejuensis KCTC 2396
 
Marinomonas sp. MWYL1

Gene: Mmwyl1_0134: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Oceanobacter sp. RED65

Gene: RED65_10849: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Oceanospirillum sp. MED92
 
Reinekea sp. MED297
 
Marinobacter aqueolei

Gene: Maqu_2930: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Marinobacter sp. ELB17
 
Teredinibacter turnerae T7901

Gene: TERTU_4601: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Saccharophagus degradans 2-40

Gene: Sde_3707: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Cellvibrio japonicus Ueda107
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD