Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Various betaproteobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azoarcus sp. EbN1
Dechloromonas aromatica RCB
Thauera sp. MZ1T 1 1
Chromobacterium violaceum ATCC 12472
Laribacter hongkongensis HLHK9
Neisseria meningitidis MC58
Methylobacillus flagellatus KT
Methylophilales bacterium HTCC2181
Methylotenera mobilis JLW8
Nitrosomonas europaea ATCC 19718
Nitrosospira multiformis ATCC 25196
Thiobacillus denitrificans
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
 
Azoarcus sp. EbN1
 
Dechloromonas aromatica RCB
*
Thauera sp. MZ1T

Site:
position = -93
score = 12.1441
sequence = CGTGGCTCCAA-(13)-TGTGGCACTAC-(2)-AAGGTACCACC

Gene: Tmz1t_1909: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Chromobacterium violaceum ATCC 12472
 
Laribacter hongkongensis HLHK9
 
Neisseria meningitidis MC58
 
Methylobacillus flagellatus KT
 
Methylophilales bacterium HTCC2181
 
Methylotenera mobilis JLW8
 
Nitrosomonas europaea ATCC 19718
 
Nitrosospira multiformis ATCC 25196
 
Thiobacillus denitrificans
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD