Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Enterobacteriales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 18 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Citrobacter koseri ATCC BAA-895 4 2
Edwardsiella tarda EIB202
Enterobacter sp. 638 4 2
Erwinia amylovora ATCC 49946
Erwinia carotovora subsp. atroseptica SCRI1043
Escherichia coli str. K-12 substr. MG1655
Klebsiella pneumoniae subsp. pneumoniae MGH 78578 3 2
Photorhabdus luminescens subsp. laumondii TTO1
Proteus mirabilis HI4320
Salmonella typhimurium LT2 4 2
Serratia proteamaculans 568 4 2
Yersinia pestis KIM
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxZ
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_00373: Short hypothetical protein in pyridoxine metabolism
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_02765: Short hypothetical protein in pyridoxine metabolism
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2

Gene: STM2434: Short hypothetical protein in pyridoxine metabolism
*
Serratia proteamaculans 568

Site:
position = -56
score = 3.98983
sequence = TTTGTATTAGTTCAAA

Gene: Spro_2564: Short hypothetical protein in pyridoxine metabolism
 
Yersinia pestis KIM
Short hypothetical protein in pyridoxine metabolism
COG0518
 
Citrobacter koseri ATCC BAA-895

Gene: CKO_00370: Putative glutamine amidotransferase-like protein
 
Edwardsiella tarda EIB202
 
Enterobacter sp. 638

Gene: Ent638_4214: Putative glutamine amidotransferase-like protein
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Gene: KPN_01781: Putative glutamine amidotransferase-like protein
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2

Gene: STM2437: Putative glutamine amidotransferase-like protein
 
Serratia proteamaculans 568

Gene: Spro_2565: Putative glutamine amidotransferase-like protein
 
Yersinia pestis KIM
Putative glutamine amidotransferase-like protein
pdxK
*
Citrobacter koseri ATCC BAA-895

Site:
position = -81
score = 5.57304
sequence = ATTGACCTATGACAAA

Site:
position = -59
score = 4.91317
sequence = TTTAGCATATGACGAT

Gene: CKO_00372: Pyridoxal kinase (EC 2.7.1.35)
 
Edwardsiella tarda EIB202
 2
Enterobacter sp. 638

Gene: Ent638_2946: Pyridoxal kinase (EC 2.7.1.35)

Gene: Ent638_4211: Pyridoxal kinase (EC 2.7.1.35)
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655

Gene: b2418: Pyridoxal kinase (EC 2.7.1.35)
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -81
score = 5.57304
sequence = ATTGACCTATGACAAA

Site:
position = -59
score = 5.05534
sequence = TTTAGCATAGGACGAA

Gene: KPN_02766: Pyridoxal kinase (EC 2.7.1.35)
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
*
Salmonella typhimurium LT2

Site:
position = -81
score = 5.57304
sequence = ATTGACCTATGACAAA

Site:
position = -59
score = 5.32013
sequence = TTTAGCATATGACAAT

Gene: STM2435: Pyridoxal kinase (EC 2.7.1.35)
 
Serratia proteamaculans 568

Gene: Spro_2566: Pyridoxal kinase (EC 2.7.1.35)
 
Yersinia pestis KIM
Pyridoxal kinase (EC 2.7.1.35)
pdxR2
*
Citrobacter koseri ATCC BAA-895

Site:
position = -39
score = 4.91317
sequence = ATCGTCATATGCTAAA

Site:
position = -17
score = 5.57304
sequence = TTTGTCATAGGTCAAT

Gene: CKO_00371: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Edwardsiella tarda EIB202
*
Enterobacter sp. 638

Site:
position = -36
score = 5.28271
sequence = ATTGTCCTAGGCTAAA

Site:
position = -14
score = 4.08223
sequence = TTTGAACCAGGTCAAT

Gene: Ent638_4213: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043
 
Escherichia coli str. K-12 substr. MG1655
*
Klebsiella pneumoniae subsp. pneumoniae MGH 78578

Site:
position = -39
score = 5.05534
sequence = TTCGTCCTATGCTAAA

Site:
position = -17
score = 5.57304
sequence = TTTGTCATAGGTCAAT

Gene: KPN_02767: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
*
Salmonella typhimurium LT2

Site:
position = -39
score = 5.32013
sequence = ATTGTCATATGCTAAA

Site:
position = -17
score = 5.57304
sequence = TTTGTCATAGGTCAAT

Gene: STM2436: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
*
Serratia proteamaculans 568

Site:
position = -28
score = 3.98983
sequence = TTTGAACTAATACAAA

Gene: Spro_2563: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
 
Yersinia pestis KIM
Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
COG0325
 
Citrobacter koseri ATCC BAA-895
 
Edwardsiella tarda EIB202
*
Enterobacter sp. 638

Site:
position = -71
score = 4.08223
sequence = ATTGACCTGGTTCAAA

Site:
position = -49
score = 5.28271
sequence = TTTAGCCTAGGACAAT

Gene: Ent638_4212: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
 
Erwinia amylovora ATCC 49946
 
Erwinia carotovora subsp. atroseptica SCRI1043

Gene: ECA4047: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
 
Escherichia coli str. K-12 substr. MG1655
 
Klebsiella pneumoniae subsp. pneumoniae MGH 78578
 
Photorhabdus luminescens subsp. laumondii TTO1
 
Proteus mirabilis HI4320
 
Salmonella typhimurium LT2
 
Serratia proteamaculans 568
 
Yersinia pestis KIM
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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