Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Idiomarina loihiensis L2TR
Idiomarina baltica OS145
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H 2 1
Alteromonas macleodii 'Deep ecotype'
Alteromonadales bacterium TW-7
Pseudoalteromonas tunicata D2 2 1
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas atlantica T6c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Idiomarina loihiensis L2TR
 
Idiomarina baltica OS145
 
Glaciecola sp. HTCC2999
*
Colwellia psychrerythraea 34H

Site:
position = -105
score = 12.6476
sequence = TCTGGTCTA-(14)-TCTGGTTGT-(6)-TATACCAAA

Gene: CPS_3936: GCN5-related N-acetyltransferase domain
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7
*
Pseudoalteromonas tunicata D2

Site:
position = -89
score = 12.8244
sequence = TTTGGTCTA-(14)-ACTGGTTGT-(6)-TATACCAGA

Gene: PTD2_06329: GCN5-related N-acetyltransferase domain
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas atlantica T6c
GCN5-related N-acetyltransferase domain
pdxO2
 
Idiomarina loihiensis L2TR
 
Idiomarina baltica OS145
 
Glaciecola sp. HTCC2999
 
Colwellia psychrerythraea 34H

Gene: CPS_3937: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Alteromonas macleodii 'Deep ecotype'
 
Alteromonadales bacterium TW-7
 
Pseudoalteromonas tunicata D2

Gene: PTD2_06324: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Pseudoalteromonas haloplanktis TAC125
 
Pseudoalteromonas atlantica T6c
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD