Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxW - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 1 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella amazonensis SB2B
Shewanella baltica OS155
Shewanella denitrificans OS217
Shewanella frigidimarina NCIMB 400
Shewanella halifaxensis HAW-EB4
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella pealeana ATCC 700345
Shewanella piezotolerans WP3
Shewanella putrefaciens CN-32
Shewanella sediminis HAW-EB3
Shewanella sp ANA-3
Shewanella sp MR-4
Shewanella sp MR-7
Shewanella sp W3-18-1
Shewanella woodyi ATCC 51908 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Shewanella amazonensis SB2B
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella halifaxensis HAW-EB4
 
Shewanella loihica PV-4
 
Shewanella oneidensis MR-1
 
Shewanella pealeana ATCC 700345
 
Shewanella piezotolerans WP3
 
Shewanella putrefaciens CN-32
 
Shewanella sediminis HAW-EB3
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella sp W3-18-1
*
Shewanella woodyi ATCC 51908

Site:
position = -89
score = 12.666
sequence = TCTGGTATA-(14)-TCTGGGTCT-(6)-TATACCAGA

Gene: Swoo_3372: GCN5-related N-acetyltransferase domain
GCN5-related N-acetyltransferase domain
pdxO2
 
Shewanella amazonensis SB2B
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella halifaxensis HAW-EB4
 
Shewanella loihica PV-4
 
Shewanella oneidensis MR-1
 
Shewanella pealeana ATCC 700345
 
Shewanella piezotolerans WP3
 
Shewanella putrefaciens CN-32
 
Shewanella sediminis HAW-EB3
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella sp W3-18-1
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3371: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD