Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Fjoh_4822 - Flavobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 5 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Candidatus Sulcia muelleri SMDSEM
Blattabacterium sp. (Blattella germanica) str. Bge
Capnocytophaga ochracea DSM 7271
Cellulophaga sp. MED134
Croceibacter atlanticus HTCC2559
Flavobacterium psychrophilum JIP02/86
Flavobacterium johnsoniae UW101 1 1
Flavobacteriales bacterium HTCC2170 1 1
Flavobacteriales bacterium ALC-1
Flavobacteriaceae bacterium 3519-10
Flavobacteria bacterium BBFL7
Flavobacteria bacterium BAL38 1 1
Kordia algicida OT-1
Gramella forsetii KT0803
Polaribacter irgensii 23-P 1 1
Leeuwenhoekiella blandensis MED217
Tenacibaculum sp. MED152 1 1
Robiginitalea biformata HTCC2501
Psychroflexus torquis ATCC 700755
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
omp
 
Candidatus Sulcia muelleri SMDSEM
 
Blattabacterium sp. (Blattella germanica) str. Bge
 
Capnocytophaga ochracea DSM 7271
 
Cellulophaga sp. MED134
 
Croceibacter atlanticus HTCC2559
 
Flavobacterium psychrophilum JIP02/86
*
Flavobacterium johnsoniae UW101

Site:
position = -81
score = 13.2317
sequence = AACCGGACCAC-(12)-AACTGGTATAC-(4)-TTAGTACGGCA

Gene: Fjoh_4821: TonB-dependent receptor domain protein, putative outer membrane transporter
*
Flavobacteriales bacterium HTCC2170

Site:
position = -112
score = 14.9027
sequence = AACCGGACTAT-(12)-AACTGGACTAG-(4)-ATCGTCCGGAA

Gene: FB2170_07439: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Flavobacteriales bacterium ALC-1
 
Flavobacteriaceae bacterium 3519-10
 
Flavobacteria bacterium BBFL7
*
Flavobacteria bacterium BAL38

Site:
position = -86
score = 14.159
sequence = AACCGGACTAT-(12)-ATCTGGACTAT-(4)-GTAGTCCGGAA

Gene: FBBAL38_06300: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Kordia algicida OT-1
 
Gramella forsetii KT0803
*
Polaribacter irgensii 23-P

Site:
position = -93
score = 14.7027
sequence = AACCGGACTAT-(12)-AACTGGACTAG-(4)-GTCGTCCGGAA

Gene: PI23P_03222: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Leeuwenhoekiella blandensis MED217
*
Tenacibaculum sp. MED152

Site:
position = -85
score = 11.4289
sequence = AAGTGGACTAT-(12)-AACCGGACTAT-(4)-AGCGCTTGTAA

Gene: MED152_06570: TonB-dependent receptor domain protein, putative outer membrane transporter
 
Robiginitalea biformata HTCC2501
 
Psychroflexus torquis ATCC 700755
TonB-dependent receptor domain protein, putative outer membrane transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD