Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CPS_4612 - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alteromonadales bacterium TW-7
Alteromonas macleodii 'Deep ecotype'
Colwellia psychrerythraea 34H 1 1
Glaciecola sp. HTCC2999
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas tunicata D2 1 1
Pseudoalteromonas haloplanktis TAC125 1 1
Pseudoalteromonas atlantica T6c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
 
Alteromonadales bacterium TW-7
 
Alteromonas macleodii 'Deep ecotype'
*
Colwellia psychrerythraea 34H

Site:
position = -370
score = 8.41906
sequence = AACTGTATAGG-(14)-TTTTGTATATG

Gene: CPS_4613: Permease of the drug/metabolite transporter (DMT) superfamily
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
*
Pseudoalteromonas tunicata D2

Site:
position = -96
score = 9.67516
sequence = ATCTGTATAGG-(14)-ATCTGTATATG

Gene: PTD2_06135: Permease of the drug/metabolite transporter (DMT) superfamily
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -91
score = 9.37147
sequence = ATCTGTATAGG-(14)-TTCTGTATATG

Gene: PSHAa0058: Permease of the drug/metabolite transporter (DMT) superfamily
 
Pseudoalteromonas atlantica T6c

Gene: Patl_2211: Permease of the drug/metabolite transporter (DMT) superfamily
Permease of the drug/metabolite transporter (DMT) superfamily
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD