Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1 1 1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009 4 2
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyA
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
*
Rhodopseudomonas palustris CGA009

Site:
position = -128
score = 10.4525
sequence = AATTGGTTGG-(13)-AAGTGGAAGG-(6)-CAGACCACGC

Gene: RPA2796: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Serine hydroxymethyltransferase (EC 2.1.2.1)
PF01168
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2795: PLP-binding protein involved in PLP homeostasis
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
PLP-binding protein involved in PLP homeostasis
 
CRON 2.
PF03594
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
*
Rhodopseudomonas palustris CGA009

Site:
position = -58
score = 13.4421
sequence = AAATGGTCTG-(13)-TAATGGAGGG-(6)-CAGGCCACCG

Gene: RPA2798: Putative pyridoxine transport protein
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Putative pyridoxine transport protein
pdxK
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4233: Pyridoxal kinase (EC 2.7.1.35)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2799: Pyridoxal kinase (EC 2.7.1.35)
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Pyridoxal kinase (EC 2.7.1.35)
 
CRON 3.
PdxR
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
*
Mesorhizobium sp. BNC1

Site:
position = -70
score = 8.27576
sequence = ACATGCCTTG-(13)-CAATGGCCTG-(6)-CCTGCCAATT

Gene: Meso_4362: Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009

Gene: RPA2797: Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Transcriptional regulator for pyridoxine/pyridoxal homeostasis, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD