Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Rhodospirillales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 6 2
Rhodospirillum centenum SW
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Granulibacter bethesdensis CGDNIH1
Gluconobacter oxydans 621H
Gluconacetobacter diazotrophicus PAl 5
Azospirillum sp. B510
Acetobacter pasteurianus IFO 3283-01
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glyA
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -151
score = 12.8182
sequence = AAATGGTCTG-(13)-AAATGGCAGG-(6)-CAGACCATCT

Gene: Rru_A1142: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
Serine hydroxymethyltransferase (EC 2.1.2.1)
PF01168
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1141: PLP-binding protein involved in PLP homeostasis
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
PLP-binding protein involved in PLP homeostasis
 
CRON 2.
PF03594
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -115
score = 13.9255
sequence = AAATGGTCTG-(13)-AAGTGGCTGG-(6)-CAGGCCATTC

Gene: Rru_A1144: Putative pyridoxine transport protein
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
Putative pyridoxine transport protein
pdxK
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1145: Pyridoxal kinase (EC 2.7.1.35)
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
Pyridoxal kinase (EC 2.7.1.35)
PF00155
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1146: Pyridoxal phosphate-dependent transferase
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
Pyridoxal phosphate-dependent transferase
PF00202
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1147: Pyridoxal phosphate-dependent transferase
 
Rhodospirillum centenum SW
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Granulibacter bethesdensis CGDNIH1
 
Gluconobacter oxydans 621H
 
Gluconacetobacter diazotrophicus PAl 5
 
Azospirillum sp. B510
 
Acetobacter pasteurianus IFO 3283-01
Pyridoxal phosphate-dependent transferase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD