Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 1 1
Bordetella bronchiseptica RB50 2 1
Bordetella petrii DSM 12804
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF03594
*
Bordetella avium 197N

Site:
position = -109
score = 13.6213
sequence = AATTGGCCGG-(13)-AAATGGATGG-(6)-CAGTCCATTT

Gene: BAV1501: Putative pyridoxine transport protein
*
Bordetella bronchiseptica RB50

Site:
position = -114
score = 9.5372
sequence = AAGTGGTCTG-(13)-ATGTGGCATG-(6)-CCTGCCACAT

Gene: BB0709: Putative pyridoxine transport protein
 
Bordetella petrii DSM 12804
Putative pyridoxine transport protein
glyA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB0708: Serine hydroxymethyltransferase (EC 2.1.2.1)
 
Bordetella petrii DSM 12804
Serine hydroxymethyltransferase (EC 2.1.2.1)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD