Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HmgS - Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: MarR
Regulation mode: repressor
Biological process: Tyrosine degradation
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Alteromonadales bacterium TW-7 3 2
Alteromonas macleodii 'Deep ecotype'
Colwellia psychrerythraea 34H
Glaciecola sp. HTCC2999
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas tunicata D2 3 2
Pseudoalteromonas haloplanktis TAC125 3 2
Pseudoalteromonas atlantica T6c
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hmgA
*
Alteromonadales bacterium TW-7

Site:
position = -79
score = 5.3699
sequence = TTGAAATTACTCTCAC

Gene: ATW7_02742: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02539: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Colwellia psychrerythraea 34H
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145

Gene: OS145_07132: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Idiomarina loihiensis L2TR

Gene: IL0721: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Pseudoalteromonas tunicata D2

Site:
position = -64
score = 5.20543
sequence = TTGAATATAGTCTCAC

Gene: PTD2_03416: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -79
score = 5.72108
sequence = TTGAAATTAGTCTCAC

Gene: PSHAb0338: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
 
Pseudoalteromonas atlantica T6c
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
hmgB
 
Alteromonadales bacterium TW-7

Gene: ATW7_02737: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Alteromonas macleodii 'Deep ecotype'

Gene: MADE_02826: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Colwellia psychrerythraea 34H

Gene: CPS_3762: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145

Gene: OS145_07122: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Idiomarina loihiensis L2TR

Gene: IL0719: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudoalteromonas tunicata D2

Gene: PTD2_03421: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudoalteromonas haloplanktis TAC125

Gene: PSHAb0337: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudoalteromonas atlantica T6c

Gene: Patl_1448: Maleylacetoacetate isomerase (EC 5.2.1.2)
Maleylacetoacetate isomerase (EC 5.2.1.2)
 
CRON 2.
hmgS
*
Alteromonadales bacterium TW-7

Site:
position = 33
score = 5.3699
sequence = GTGAGAGTAATTTCAA

Gene: ATW7_02747: Tyrosine degradation transcriptional activator, MarR family
 
Alteromonas macleodii 'Deep ecotype'
 
Colwellia psychrerythraea 34H
 
Glaciecola sp. HTCC2999
 
Idiomarina baltica OS145
 
Idiomarina loihiensis L2TR
*
Pseudoalteromonas tunicata D2

Site:
position = -165
score = 5.20543
sequence = GTGAGACTATATTCAA

Gene: PTD2_03411: Tyrosine degradation transcriptional activator, MarR family
*
Pseudoalteromonas haloplanktis TAC125

Site:
position = -103
score = 5.72108
sequence = GTGAGACTAATTTCAA

Gene: PSHAb0339: Tyrosine degradation transcriptional activator, MarR family
 
Pseudoalteromonas atlantica T6c
Tyrosine degradation transcriptional activator, MarR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD