Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HmgQ - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: activator
Biological process: Tyrosine degradation
Effector: 4-hydroxyphenylpyruvate
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP 5 2
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp
Pseudomonas putida KT2440
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hpd
*
Azotobacter vinelandii AvOP

Site:
position = -126
score = 5.96055
sequence = ATCTATTTTTTAGAT

Gene: Avin_50170: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501

Gene: PST_0869: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
 
Pseudomonas syringae pv. tomato str. DC3000
4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
gloA
 
Azotobacter vinelandii AvOP

Gene: Avin_50180: Predicted homogentisate dioxygenase, GloA family
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Predicted homogentisate dioxygenase, GloA family
hmgC
 
Azotobacter vinelandii AvOP

Gene: Avin_50190: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas aeruginosa PAO1

Gene: PA2008: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas entomophila L48

Gene: PSEEN4611: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0968: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas mendocina ymp

Gene: Pmen_1698: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas putida KT2440

Gene: PP4620: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas stutzeri A1501

Gene: PST_0871: Fumarylacetoacetase (EC 3.7.1.2)
 
Pseudomonas syringae pv. tomato str. DC3000

Gene: PSPTO3550: Fumarylacetoacetase (EC 3.7.1.2)
Fumarylacetoacetase (EC 3.7.1.2)
hmgB
 
Azotobacter vinelandii AvOP

Gene: Avin_50200: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas aeruginosa PAO1

Gene: PA2007: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas entomophila L48

Gene: PSEEN4610: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas fluorescens Pf-5

Gene: PFL_0969: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas mendocina ymp

Gene: Pmen_1699: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas putida KT2440

Gene: PP4619: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas stutzeri A1501

Gene: PST_0872: Maleylacetoacetate isomerase (EC 5.2.1.2)
 
Pseudomonas syringae pv. tomato str. DC3000
Maleylacetoacetate isomerase (EC 5.2.1.2)
 
CRON 2.
hmgQ
*
Azotobacter vinelandii AvOP

Site:
position = -38
score = 5.29688
sequence = ATCTAAAAAATAGAT

Gene: Avin_50160: Tyrosine degradation transcriptional regulator, LysR family
 
Pseudomonas aeruginosa PAO1
 
Pseudomonas entomophila L48
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
 
Pseudomonas putida KT2440
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Tyrosine degradation transcriptional regulator, LysR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD