Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bamb_3558 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD 1 1
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 1 1
Burkholderia pseudomallei K96243
Burkholderia sp. 383 1 1
Burkholderia vietnamiensis G4 1 1
Burkholderia xenovorans LB400
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bglu_1g21320
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1

Gene: bglu_1g21320: hypothetical protein
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -171
score = 18.9721
sequence = CCAGATACAGCCGA-(11)-AGCGGAACAGAGCA-(17)-AGCGGTGCAGATTC-(9)-GAGTCTGTTGTGTT

Gene: Bphy_3122: hypothetical protein
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
hypothetical protein
 
CRON 2.
Bamb_3557
*
Burkholderia cepacia AMMD

Site:
position = -170
score = 23.2154
sequence = CCAGATACAGATTC-(11)-ACCGATACAGCAGG-(17)-ACCGCAACAGATTC-(9)-GAATCTGTCCGGCC

Gene: Bamb_3557: hypothetical protein
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -170
score = 22.9219
sequence = CCAGATACAGATTC-(11)-ACCGATACAGCGAT-(17)-ACCGCAACAGATTC-(9)-GAATCTGTCGTGCC

Gene: Bcep18194_B1881: hypothetical protein
*
Burkholderia vietnamiensis G4

Site:
position = -170
score = 22.8869
sequence = CCAGATACAGATGT-(11)-ACCGATACAGCGCG-(17)-ACCGCAACAGATCG-(9)-GAATCTGTCCCGCT

Gene: Bcep1808_4709: hypothetical protein
 
Burkholderia xenovorans LB400
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD