Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Cpin_4810 - Sphingobacteria

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Bacteroidetes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Algoriphagus sp. PR1
Chitinophaga pinensis DSM 2588 3 2
Cytophaga hutchinsonii ATCC 33406
Dyadobacter fermentans DSM 18053 5 2
Microscilla marina ATCC 23134 1 1
Pedobacter heparinus DSM 2366 2 1
Pedobacter sp. BAL39
Salinibacter ruber DSM 13855
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00583
 
Algoriphagus sp. PR1
*
Chitinophaga pinensis DSM 2588

Site:
position = -82
score = 6.94852
sequence = AACTGTGTC-(21)-GACTGTATT

Gene: Cpin_4809: GCN5-related N-acetyltransferase domain
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053
 
Microscilla marina ATCC 23134

Gene: M23134_01958: GCN5-related N-acetyltransferase domain
 
Pedobacter heparinus DSM 2366

Gene: Phep_1633: GCN5-related N-acetyltransferase domain
 
Pedobacter sp. BAL39

Gene: PBAL39_25155: GCN5-related N-acetyltransferase domain
 
Salinibacter ruber DSM 13855
GCN5-related N-acetyltransferase domain
 
CRON 2.
PF00892
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_2926: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Cytophaga hutchinsonii ATCC 33406
*
Dyadobacter fermentans DSM 18053

Site:
position = -86
score = 8.42024
sequence = ATCTGTTAT-(21)-ATCTGTTTT

Site:
position = -116
score = 7.36397
sequence = AGCTGTTCT-(21)-ATCTGTTAT

Gene: Dfer_1183: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Microscilla marina ATCC 23134
 
Pedobacter heparinus DSM 2366
 
Pedobacter sp. BAL39

Gene: PBAL39_20645: Permeases of the drug/metabolite transporter (DMT) superfamily
 
Salinibacter ruber DSM 13855
Permeases of the drug/metabolite transporter (DMT) superfamily
PF07609
 
Algoriphagus sp. PR1

Gene: ALPR1_11645: hypothetical protein
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_5789: hypothetical protein
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053

Gene: Dfer_1182: hypothetical protein
 
Microscilla marina ATCC 23134

Gene: M23134_05009: hypothetical protein
 
Pedobacter heparinus DSM 2366

Gene: Phep_1673: hypothetical protein
 
Pedobacter sp. BAL39

Gene: PBAL39_06626: hypothetical protein
 
Salinibacter ruber DSM 13855
hypothetical protein
PF00282
 
Algoriphagus sp. PR1
*
Chitinophaga pinensis DSM 2588

Site:
position = -125
score = 6.0236
sequence = AACTGATCT-(22)-ATCTGGTCA

Site:
position = -99
score = 7.81167
sequence = ATCTGATCT-(21)-ATCTGTTTT

Gene: Cpin_2925: Pyridoxal-dependent decarboxylase
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053

Gene: Dfer_1181: Pyridoxal-dependent decarboxylase
*
Microscilla marina ATCC 23134

Site:
position = -72
score = 6.17586
sequence = CTCTGTTTT-(22)-TTGTGTAAT

Site:
position = -103
score = 7.12411
sequence = AACTGATAT-(22)-CTCTGTTTT

Gene: M23134_05127: Pyridoxal-dependent decarboxylase
 
Pedobacter heparinus DSM 2366
 
Pedobacter sp. BAL39
 
Salinibacter ruber DSM 13855
Pyridoxal-dependent decarboxylase
 
CRON 3.
COG1893
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588
 
Cytophaga hutchinsonii ATCC 33406
*
Dyadobacter fermentans DSM 18053

Site:
position = -85
score = 7.45654
sequence = AACTGCTAT-(21)-ATCTGCTAT

Gene: Dfer_0751: Ketopantoate reductase ApbA/PanE domain protein
 
Microscilla marina ATCC 23134
 
Pedobacter heparinus DSM 2366
 
Pedobacter sp. BAL39
 
Salinibacter ruber DSM 13855
Ketopantoate reductase ApbA/PanE domain protein
COG1028
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053

Gene: Dfer_0752: short-chain dehydrogenase/reductase SDR
 
Microscilla marina ATCC 23134
 
Pedobacter heparinus DSM 2366
 
Pedobacter sp. BAL39
 
Salinibacter ruber DSM 13855
short-chain dehydrogenase/reductase SDR
 
CRON 4.
Phep_3794
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053
 
Microscilla marina ATCC 23134
*
Pedobacter heparinus DSM 2366

Site:
position = -83
score = 7.52111
sequence = ATCTGTACC-(21)-ATCTGTATA

Gene: Phep_3794: hypothetical protein
 
Pedobacter sp. BAL39
 
Salinibacter ruber DSM 13855
hypothetical protein
Cpin_4810
 
Algoriphagus sp. PR1
 
Chitinophaga pinensis DSM 2588

Gene: Cpin_4810: Transcriptional regulator, GntR family
 
Cytophaga hutchinsonii ATCC 33406
 
Dyadobacter fermentans DSM 18053
 
Microscilla marina ATCC 23134
 
Pedobacter heparinus DSM 2366

Gene: Phep_3795: Transcriptional regulator, GntR family
 
Pedobacter sp. BAL39
 
Salinibacter ruber DSM 13855
Transcriptional regulator, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD