Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PrpR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 48 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 5 1
Shewanella putrefaciens CN-32 5 1
Shewanella sp W3-18-1 6 1
Shewanella sp ANA-3 5 1
Shewanella sp MR-4 5 1
Shewanella sp MR-7 5 1
Shewanella baltica OS155 6 1
Shewanella denitrificans OS217 5 1
Shewanella frigidimarina NCIMB 400 5 1
Shewanella amazonensis SB2B 5 1
Shewanella loihica PV-4 6 2
Shewanella pealeana ATCC 700345 5 1
Shewanella halifaxensis HAW-EB4 5 1
Shewanella piezotolerans WP3 5 1
Shewanella sediminis HAW-EB3 6 2
Shewanella woodyi ATCC 51908 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpR
*
Shewanella oneidensis MR-1

Site:
position = -86
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -256
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -125
score = 5.1775
sequence = ATTGTTGACAAT

Gene: SO0346: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella putrefaciens CN-32

Site:
position = -34
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -73
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -204
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Sputcn32_3643: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella sp W3-18-1

Site:
position = -34
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -73
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -204
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Sputw3181_3783: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella sp ANA-3

Site:
position = -208
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -77
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -38
score = 5.86661
sequence = ATTGTCGACAAT

Gene: Shewana3_3824: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella sp MR-4

Site:
position = -209
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -38
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -77
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Shewmr4_3628: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella sp MR-7

Site:
position = -38
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -209
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -77
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Shewmr7_0316: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella baltica OS155

Site:
position = -34
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -73
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -204
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Sbal_4046: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella denitrificans OS217

Site:
position = -87
score = 5.54402
sequence = TTTGTCGACAAT

Site:
position = -65
score = 4.48838
sequence = ATTGTTGACCAT

Site:
position = -35
score = 5.44377
sequence = ATTGTCGACAAC

Gene: Sden_1663: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -65
score = 5.44377
sequence = ATTGTCGACAAC

Site:
position = -117
score = 5.54402
sequence = ATTGTCGACAAA

Gene: Sfri_1856: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella amazonensis SB2B

Site:
position = -83
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -228
score = 4.75466
sequence = GTTGTTGACAAT

Gene: Sama_3293: Propionate catabolism operon transcriptional regulator of GntR family
*2
Shewanella loihica PV-4

Site:
position = -150
score = 4.43207
sequence = GTTGTCAACAAA

Site:
position = -54
score = 5.1775
sequence = ATTGTTGACAAT

Gene: Shew_0280: Propionate catabolism operon transcriptional regulator of GntR family

Site:
position = -292
score = 5.54402
sequence = TTTGTCGACAAT

Site:
position = -92
score = 5.54402
sequence = TTTGTCGACAAT

Site:
position = -40
score = 5.44377
sequence = ATTGTCGACAAC

Gene: Shew_1819: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella pealeana ATCC 700345

Site:
position = -93
score = 5.54402
sequence = TTTGTCGACAAT

Site:
position = -71
score = 4.48838
sequence = ATTGTTGACTAT

Site:
position = -41
score = 5.86661
sequence = ATTGTCGACAAT

Gene: Spea_2323: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -41
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -71
score = 5.1775
sequence = ATTGTTGACAAT

Site:
position = -93
score = 5.54402
sequence = TTTGTCGACAAT

Gene: Shal_1960: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella piezotolerans WP3

Site:
position = -92
score = 5.54402
sequence = TTTGTCGACAAT

Site:
position = -40
score = 5.86661
sequence = ATTGTCGACAAT

Gene: swp_2427: Propionate catabolism operon transcriptional regulator of GntR family
*2
Shewanella sediminis HAW-EB3

Site:
position = -38
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -91
score = 5.54402
sequence = TTTGTCGACAAT

Gene: Ssed_2110: Propionate catabolism operon transcriptional regulator of GntR family

Site:
position = -188
score = 5.1775
sequence = ATTGTCAACAAT

Site:
position = -16
score = 4.48838
sequence = ATTGTCAACCAT

Site:
position = -56
score = 4.85491
sequence = ATTGTTGACAAA

Gene: Ssed_4175: Propionate catabolism operon transcriptional regulator of GntR family
*
Shewanella woodyi ATCC 51908

Site:
position = -92
score = 5.86661
sequence = ATTGTCGACAAT

Site:
position = -40
score = 5.86661
sequence = ATTGTCGACAAT

Gene: Swoo_2500: Propionate catabolism operon transcriptional regulator of GntR family
Propionate catabolism operon transcriptional regulator of GntR family
prpB
 
Shewanella oneidensis MR-1

Gene: SO0345: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3644: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3784: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sp ANA-3

Gene: Shewana3_3825: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sp MR-4

Gene: Shewmr4_3629: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sp MR-7

Gene: Shewmr7_0315: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella baltica OS155

Gene: Sbal_4047: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella denitrificans OS217

Gene: Sden_1664: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1857: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella amazonensis SB2B

Gene: Sama_3294: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella loihica PV-4

Gene: Shew_1820: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella pealeana ATCC 700345

Gene: Spea_2322: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1961: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella piezotolerans WP3

Gene: swp_2428: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2111: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2499: Methylisocitrate lyase (EC 4.1.3.30)
Methylisocitrate lyase (EC 4.1.3.30)
prpC
 
Shewanella oneidensis MR-1

Gene: SO0344: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3645: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3785: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella sp ANA-3

Gene: Shewana3_3826: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella sp MR-4

Gene: Shewmr4_3630: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella sp MR-7

Gene: Shewmr7_0314: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella baltica OS155

Gene: Sbal_4048: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella denitrificans OS217

Gene: Sden_1665: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1858: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella amazonensis SB2B

Gene: Sama_3295: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella loihica PV-4

Gene: Shew_1821: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella pealeana ATCC 700345

Gene: Spea_2321: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1962: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella piezotolerans WP3

Gene: swp_2429: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2112: 2-methylcitrate synthase (EC 2.3.3.5)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2498: 2-methylcitrate synthase (EC 2.3.3.5)
2-methylcitrate synthase (EC 2.3.3.5)
acnD
 
Shewanella oneidensis MR-1

Gene: SO0343: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3646: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3786: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella sp ANA-3

Gene: Shewana3_3827: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella sp MR-4

Gene: Shewmr4_3631: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella sp MR-7

Gene: Shewmr7_0313: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella baltica OS155

Gene: Sbal_4049: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella denitrificans OS217

Gene: Sden_1666: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1859: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella amazonensis SB2B

Gene: Sama_3296: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella loihica PV-4

Gene: Shew_1822: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella pealeana ATCC 700345

Gene: Spea_2320: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1963: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella piezotolerans WP3

Gene: swp_2430: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2113: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2497: Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Aconitate hydratase, predicted 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Shewanella oneidensis MR-1

Gene: SO0342: Aconitase accessory protein PrpF
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3647: Aconitase accessory protein PrpF
 
Shewanella sp W3-18-1

Gene: Sputw3181_3787: Aconitase accessory protein PrpF
 
Shewanella sp ANA-3

Gene: Shewana3_3828: Aconitase accessory protein PrpF
 
Shewanella sp MR-4

Gene: Shewmr4_3632: Aconitase accessory protein PrpF
 
Shewanella sp MR-7

Gene: Shewmr7_0312: Aconitase accessory protein PrpF
 
Shewanella baltica OS155

Gene: Sbal_4050: Aconitase accessory protein PrpF
 
Shewanella denitrificans OS217

Gene: Sden_1667: Aconitase accessory protein PrpF
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1860: Aconitase accessory protein PrpF
 
Shewanella amazonensis SB2B

Gene: Sama_3297: Aconitase accessory protein PrpF
 
Shewanella loihica PV-4

Gene: Shew_1823: Aconitase accessory protein PrpF
 
Shewanella pealeana ATCC 700345

Gene: Spea_2319: Aconitase accessory protein PrpF
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1964: Aconitase accessory protein PrpF
 
Shewanella piezotolerans WP3

Gene: swp_2431: Aconitase accessory protein PrpF
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2114: Aconitase accessory protein PrpF
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2496: Aconitase accessory protein PrpF
Aconitase accessory protein PrpF
prpB2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1

Gene: Sputw3181_3788: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_4051: Methylisocitrate lyase (EC 4.1.3.30)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908
Methylisocitrate lyase (EC 4.1.3.30)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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