Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine/pyridoxal homeostasis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152 1 1
Rhodococcus erythropolis PR4 1 1
Rhodococcus opacus B4 1 1
Rhodococcus sp. RHA1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxO
*
Nocardia farcinica IFM 10152

Site:
position = -67
score = 13.3212
sequence = ATTGGCCTGT-(14)-ATTGGCCCTT-(3)-TCATGCCACT

Gene: nfa50150: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Rhodococcus erythropolis PR4

Site:
position = -68
score = 12.8996
sequence = AGTGGCCTAT-(14)-ATTGGACCAT-(4)-TGAAGCCACT

Gene: RER_58490: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Rhodococcus opacus B4

Site:
position = -24
score = 11.1413
sequence = ACTGGTCTGC-(13)-TGTGGATCTG-(4)-CCGAACCACA

Gene: ROP_09560: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
*
Rhodococcus sp. RHA1

Site:
position = -66
score = 10.7247
sequence = ACTGGTCTGT-(13)-TGTGGATCTG-(4)-ATGATCCACA

Gene: RHA1_ro01234: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD