Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxR2 - Frankineae/Propionibacterineae/Pseudonocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Pyridoxine biosynthesis
Effector: Pyridoxal-5-phosphate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nakamurella multipartita DSM 44233 1 1
Frankia sp. EAN1pec
Frankia sp. CcI3
Acidothermus cellulolyticus 11B
Nocardioides sp. JS614 1 1
Propionibacterium acnes KPA171202
Actinosynnema mirum DSM 43827 2 2
Saccharomonospora viridis DSM 43017 1 1
Saccharopolyspora erythraea NRRL 2338 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxS
 
Nakamurella multipartita DSM 44233

Gene: Namu_3415: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Frankia sp. EAN1pec

Gene: Franean1_5149: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Frankia sp. CcI3

Gene: Francci3_1366: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Acidothermus cellulolyticus 11B

Gene: Acel_1348: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Nocardioides sp. JS614

Gene: Noca_2381: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Propionibacterium acnes KPA171202
*
Actinosynnema mirum DSM 43827

Site:
position = -104
score = 11.4038
sequence = AGTGGACTGC-(14)-ATTGGCTCCT-(4)-GCGGGCCACG

Gene: Amir_2108: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
*
Saccharomonospora viridis DSM 43017

Site:
position = -105
score = 13.0006
sequence = AGTGGCCTGC-(14)-AATGGCCCTT-(3)-GCAGGCCACG

Gene: Svir_14990: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
Saccharopolyspora erythraea NRRL 2338

Gene: SACE_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
 
CRON 2.
pdxO
*
Nakamurella multipartita DSM 44233

Site:
position = -59
score = 13.6883
sequence = AGTGGCCTTT-(14)-AGTGGCCCTC-(3)-GGATGCCACT

Gene: Namu_0647: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
*
Nocardioides sp. JS614

Site:
position = -67
score = 12.7326
sequence = ATTGTCCTGT-(14)-ATTGGCCCGT-(4)-GCAGGCCACT

Gene: Noca_3467: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Propionibacterium acnes KPA171202
*
Actinosynnema mirum DSM 43827

Site:
position = -68
score = 13.7146
sequence = AGTGGCATCC-(14)-ATTGGCACTT-(4)-GGGTGCCACT

Gene: Amir_5990: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -156
score = 13.3306
sequence = TGTGGCATTT-(14)-ATTGGCACTT-(3)-TAATGCCACT

Gene: SACE_6132: Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding
 
CRON 3.
PF00701
 
Nakamurella multipartita DSM 44233
 
Frankia sp. EAN1pec
 
Frankia sp. CcI3
 
Acidothermus cellulolyticus 11B
 
Nocardioides sp. JS614
 
Propionibacterium acnes KPA171202
 
Actinosynnema mirum DSM 43827
 
Saccharomonospora viridis DSM 43017
*
Saccharopolyspora erythraea NRRL 2338

Site:
position = -107
score = 12.8888
sequence = AGTGGCCCTT-(14)-ATTGGCCCTT-(3)-CGATGCCACT

Gene: SACE_1253: Dihydrodipicolinate synthase (EC 4.2.1.52)
Dihydrodipicolinate synthase (EC 4.2.1.52)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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