Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR2 - Pseudomonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Azotobacter vinelandii AvOP
Pseudomonas aeruginosa PAO1
Pseudomonas entomophila L48 1 1
Pseudomonas fluorescens Pf-5
Pseudomonas mendocina ymp
Pseudomonas putida KT2440 1 1
Pseudomonas stutzeri A1501
Pseudomonas syringae pv. tomato str. DC3000
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabP
 
Azotobacter vinelandii AvOP
 
Pseudomonas aeruginosa PAO1
*
Pseudomonas entomophila L48

Site:
position = -217
score = 6.0
sequence = TGATGTACAGGT

Gene: PSEEN2395: Gamma-aminobutyrate permease
 
Pseudomonas fluorescens Pf-5
 
Pseudomonas mendocina ymp
*
Pseudomonas putida KT2440

Site:
position = -78
score = 6.0
sequence = TGATGTACAGGT

Gene: PP2543: Gamma-aminobutyrate permease
 
Pseudomonas stutzeri A1501
 
Pseudomonas syringae pv. tomato str. DC3000
Gamma-aminobutyrate permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD