Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR2 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2 7 1
Polaromonas sp. JS666 5 1
Rhodoferax ferrireducens DSM 15236 7 1
Variovorax paradoxus S110 6 1
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
gabT
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_2002: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Methylibium petroleiphilum PM1
*
Polaromonas naphthalenivorans CJ2

Site:
position = -149
score = 15.3325
sequence = GTGTGTAGAGGT-(6)-GGCAGCACAGTA-(18)-ATCTGTATATGG

Gene: Pnap_2630: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Polaromonas sp. JS666

Site:
position = -122
score = 14.8333
sequence = CCATGTACAGCA-(6)-ACCCGCACAGTG-(17)-AGCTGTACATGG

Gene: Bpro_2912: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -126
score = 15.3325
sequence = GTATGTAGCGGT-(6)-GGCTGCACAGTG-(17)-ATCTGTATATGG

Gene: Rfer_0592: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
*
Variovorax paradoxus S110

Site:
position = -120
score = 14.8447
sequence = GTATGTACAGGA-(6)-ACCAGTACAGTC-(17)-CGGTGTACATGG

Gene: Vapar_4695: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Verminephrobacter eiseniae EF01-2
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gbtA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2631: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
 
Polaromonas sp. JS666

Gene: Bpro_2913: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0593: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
 
Variovorax paradoxus S110

Gene: Vapar_4696: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4045: Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
Predicted gamma-aminobutyrate ABC transporter, ATP-binding component
gbtD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2632: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Polaromonas sp. JS666

Gene: Bpro_2914: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0594: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Variovorax paradoxus S110

Gene: Vapar_4697: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4044: Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
Predicted gamma-aminobutyrate ABC transporter, periplasmic binding protein
gbtB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2633: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Polaromonas sp. JS666

Gene: Bpro_2915: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0595: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Variovorax paradoxus S110

Gene: Vapar_4698: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4043: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
gbtC
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2634: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Polaromonas sp. JS666

Gene: Bpro_2916: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0596: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Variovorax paradoxus S110

Gene: Vapar_4699: Predicted gamma-aminobutyrate ABC transporter, permease component
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4042: Predicted gamma-aminobutyrate ABC transporter, permease component
Predicted gamma-aminobutyrate ABC transporter, permease component
speB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2635: Agmatinase (EC 3.5.3.11)
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0597: Agmatinase (EC 3.5.3.11)
 
Variovorax paradoxus S110

Gene: Vapar_4700: Agmatinase (EC 3.5.3.11)
 
Verminephrobacter eiseniae EF01-2
Agmatinase (EC 3.5.3.11)
gabD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42

Gene: Ajs_1978: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_2003: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2324: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2636: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Polaromonas sp. JS666

Gene: Bpro_2917: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0598: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Variovorax paradoxus S110

Gene: Vapar_4701: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4041: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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