Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Csal_3199 - Oceanospirillales/Alteromonadales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glycolate utilization; Lactate utilization
Effector:
Phylum: Proteobacteria/Gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Reinekea sp. MED297
Oceanospirillum sp. MED92
Oceanobacter sp. RED65
Marinomonas sp. MWYL1
Hahella chejuensis KCTC 2396
Chromohalobacter salexigens DSM 3043 7 3
Alcanivorax borkumensis SK2
Marinobacter sp. ELB17 6 2
Marinobacter aqueolei
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
tctC
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043
 
Alcanivorax borkumensis SK2
*
Marinobacter sp. ELB17

Site:
position = -195
score = 4.30135
sequence = ATTATGAATTCATATT

Site:
position = -42
score = 4.27409
sequence = GTTTTGCTTGCAAATA

Gene: MELB17_21610: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17

Gene: MELB17_21605: Tricarboxylate transport protein TctB, small permease component
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport protein TctB, small permease component
tctA
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17

Gene: MELB17_21600: Tricarboxylate transport membrane protein TctA, large permease component
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport membrane protein TctA, large permease component
Csal_3188
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -197
score = 4.80447
sequence = ATTATGAATTCAAATT

Site:
position = -81
score = 3.385
sequence = ATTATGAGTTCATTCT

Gene: Csal_3188: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17

Gene: MELB17_21595: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Enoyl-CoA hydratase (EC 4.2.1.17)
Csal_3187
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3187: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17

Gene: MELB17_21590: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
CRON 2.
Csal_3195
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -75
score = 4.09432
sequence = AATTGGCTTGCCAAAT

Gene: Csal_3195: mandelate racemase/muconate lactonizing enzyme
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
mandelate racemase/muconate lactonizing enzyme
tctC
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3196: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3197: Tricarboxylate transport protein TctB, small permease component
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport protein TctB, small permease component
tctA
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
 
Chromohalobacter salexigens DSM 3043

Gene: Csal_3198: Tricarboxylate transport membrane protein TctA, large permease component
 
Alcanivorax borkumensis SK2
 
Marinobacter sp. ELB17
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Tricarboxylate transport membrane protein TctA, large permease component
 
CRON 3.
Csal_3199
 
Reinekea sp. MED297
 
Oceanospirillum sp. MED92
 
Oceanobacter sp. RED65
 
Marinomonas sp. MWYL1
 
Hahella chejuensis KCTC 2396
*
Chromohalobacter salexigens DSM 3043

Site:
position = -128
score = 4.02486
sequence = GAAATGAATTCAAAAT

Gene: Csal_3199: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Alcanivorax borkumensis SK2
*
Marinobacter sp. ELB17

Site:
position = -110
score = 4.51532
sequence = ATTTTGAATTCTGAAT

Gene: MELB17_21620: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Marinobacter aqueolei
 
Saccharophagus degradans 2-40
 
Teredinibacter turnerae T7901
 
Cellvibrio japonicus Ueda107
Transcriptional regulator associated with tricarboxylic transport, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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