Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Daci_3053 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glycolate utilization; Lactate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 6 2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666 7 3
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 3 2
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
sgaA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -138
score = 4.63297
sequence = ATTTTGCATTCATTTT

Site:
position = -72
score = 5.76257
sequence = ATTTTGAATGCAAAAA

Gene: Daci_3052: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -122
score = 5.21606
sequence = ATTCTGTATGCAAAAA

Site:
position = -58
score = 5.76257
sequence = ATTTTGTATGCAAAAA

Gene: Bpro_2753: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -36
score = 4.93602
sequence = GTTTTGAATGCAAAAC

Site:
position = -102
score = 5.76257
sequence = ATTTTGAATGCAAAAA

Gene: Vapar_2906: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Verminephrobacter eiseniae EF01-2
Serine--glyoxylate aminotransferase (EC 2.6.1.45)
tctC
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3051: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3050: Tricarboxylate transport protein TctB, small permease component
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Tricarboxylate transport protein TctB, small permease component
tctA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3049: Tricarboxylate transport membrane protein TctA, large permease component
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Tricarboxylate transport membrane protein TctA, large permease component
Daci_3770
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3770: putative exported protein
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2752: putative exported protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4273: putative exported protein
 
Verminephrobacter eiseniae EF01-2
putative exported protein
Daci_3771
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3771: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2751: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4272: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Verminephrobacter eiseniae EF01-2
Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
Daci_3772
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3772: Enoyl-CoA hydratase/isomerase
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2750: Enoyl-CoA hydratase/isomerase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4271: Enoyl-CoA hydratase/isomerase
 
Verminephrobacter eiseniae EF01-2
Enoyl-CoA hydratase/isomerase
 
CRON 2.
sgaA2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -111
score = 5.05964
sequence = ATTATGCATACAAAAG

Site:
position = -33
score = 4.3875
sequence = AAATTGTATGCAATTT

Gene: Bpro_0548: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
CRON 3.
Daci_3053
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*2
Delftia acidovorans SPH-1

Site:
position = -102
score = 5.76257
sequence = TTTTTGCATTCAAAAT

Site:
position = -36
score = 4.63297
sequence = AAAATGAATGCAAAAT

Gene: Daci_3053: Transcriptional regulator associated with tricarboxylic transport, GntR family

Gene: Daci_3062: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*
Polaromonas sp. JS666

Site:
position = -86
score = 5.76257
sequence = TTTTTGCATACAAAAT

Site:
position = -22
score = 5.21606
sequence = TTTTTGCATACAGAAT

Gene: Bpro_2754: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -101
score = 4.93602
sequence = GTTTTGCATTCAAAAC

Site:
position = -35
score = 5.76257
sequence = TTTTTGCATTCAAAAT

Gene: Vapar_2905: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Verminephrobacter eiseniae EF01-2
Transcriptional regulator associated with tricarboxylic transport, GntR family
dld2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_3054: D-lactate dehydrogenase, alternative
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_2755: D-lactate dehydrogenase, alternative
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_2904: D-lactate dehydrogenase, alternative
 
Verminephrobacter eiseniae EF01-2
D-lactate dehydrogenase, alternative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD