Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bphy_4252 - Burkholderia

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Lactate utilization; Glycolate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Burkholderia cepacia AMMD
Burkholderia glumae BGR1
Burkholderia mallei ATCC 23344
Burkholderia phymatum STM815 2 2
Burkholderia pseudomallei K96243
Burkholderia sp. 383 5 2
Burkholderia vietnamiensis G4
Burkholderia xenovorans LB400 4 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Bphy_4252
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -125
score = 5.89634
sequence = ATTTTGCATGCAAAAA

Site:
position = -7
score = 5.76257
sequence = TTTTTGTATGCAAAAT

Gene: Bphy_4252: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -153
score = 6.01846
sequence = ATTTTGCATGCAAAAT

Site:
position = -7
score = 5.18686
sequence = ACTTTGCATGCAAGAT

Gene: Bcep18194_B3021: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Burkholderia vietnamiensis G4
*2
Burkholderia xenovorans LB400

Site:
position = -7
score = 5.28568
sequence = ATTTTGAATGCGAAAT

Gene: Bxe_A4449: Transcriptional regulator associated with tricarboxylic transport, GntR family

Site:
position = -143
score = 5.76257
sequence = ATTTTGCATTCAAAAA

Site:
position = -7
score = 5.56277
sequence = CTTTTGTATGCAAAAT

Gene: Bxe_B3002: Transcriptional regulator associated with tricarboxylic transport, GntR family
Transcriptional regulator associated with tricarboxylic transport, GntR family
 
CRON 2.
Bphy_4542
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_4542: Putative oxalate/formate antiporter, MFS superfamily
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383
 
Burkholderia vietnamiensis G4
*
Burkholderia xenovorans LB400

Site:
position = -37
score = 5.75092
sequence = ATTTTGAATTCAAAAT

Gene: Bxe_A4451: Putative oxalate/formate antiporter, MFS superfamily
Putative oxalate/formate antiporter, MFS superfamily
 
CRON 3.
sgaA
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
*
Burkholderia phymatum STM815

Site:
position = -154
score = 5.76257
sequence = ATTTTGCATACAAAAA

Site:
position = -36
score = 5.89634
sequence = TTTTTGCATGCAAAAT

Gene: Bphy_4253: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Burkholderia pseudomallei K96243
*
Burkholderia sp. 383

Site:
position = -192
score = 5.18686
sequence = ATCTTGCATGCAAAGT

Site:
position = -46
score = 6.01846
sequence = ATTTTGCATGCAAAAT

Gene: Bcep18194_B3022: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Burkholderia vietnamiensis G4
*
Burkholderia xenovorans LB400

Site:
position = -169
score = 5.56277
sequence = ATTTTGCATACAAAAG

Site:
position = -33
score = 5.76257
sequence = TTTTTGAATGCAAAAT

Gene: Bxe_B3001: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
Serine--glyoxylate aminotransferase (EC 2.6.1.45)
Bphy_4254
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_4254: Permeases of the major facilitator superfamily
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B3023: Permeases of the major facilitator superfamily
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
Permeases of the major facilitator superfamily
bglu_2g14140
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1

Gene: bglu_2g14140: 2-keto-4-pentenoate hydratase (EC 4.2.1.-)/fumarylacetoacetate (FAA) hydrolase
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_4255: 2-keto-4-pentenoate hydratase (EC 4.2.1.-)/fumarylacetoacetate (FAA) hydrolase
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B3024: 2-keto-4-pentenoate hydratase (EC 4.2.1.-)/fumarylacetoacetate (FAA) hydrolase
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
2-keto-4-pentenoate hydratase (EC 4.2.1.-)/fumarylacetoacetate (FAA) hydrolase
dld2
 
Burkholderia cepacia AMMD
 
Burkholderia glumae BGR1
 
Burkholderia mallei ATCC 23344
 
Burkholderia phymatum STM815

Gene: Bphy_4256: D-lactate dehydrogenase, alternative
 
Burkholderia pseudomallei K96243
 
Burkholderia sp. 383

Gene: Bcep18194_B3025: D-lactate dehydrogenase, alternative
 
Burkholderia vietnamiensis G4
 
Burkholderia xenovorans LB400
D-lactate dehydrogenase, alternative
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD