Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bll4368 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glycolate utilization; Lactate utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110 14 5
Bradyrhizobium sp. BTAi1 4 3
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42
Rhizobium leguminosarum bv. viciae 3841
Rhizobium sp. NGR234
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
bll6037
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*2
Bradyrhizobium japonicum USDA 110

Site:
position = -7
score = 5.01526
sequence = AAAATGAATGCAAAAT

Gene: bll6039: Serine--glyoxylate aminotransferase (EC 2.6.1.45)

Gene: bll6037: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
*2
Bradyrhizobium sp. BTAi1

Site:
position = -86
score = 4.29964
sequence = TATATGAATTCGTTAT

Site:
position = -53
score = 4.70294
sequence = AAATTGCATGCAATCA

Gene: BBta_5729: Serine--glyoxylate aminotransferase (EC 2.6.1.45)

Gene: BBta_5728: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255

Gene: Nwi_2413: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Serine--glyoxylate aminotransferase (EC 2.6.1.45)
bll6038
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll6038: major facilitator superfamily transport protein
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
major facilitator superfamily transport protein
bll6036
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: bll6036: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Bradyrhizobium sp. BTAi1

Gene: BBta_5727: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Enoyl-CoA hydratase (EC 4.2.1.17)
 
CRON 2.
dld2
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -86
score = 5.24812
sequence = ATTTTGAATTCATAAT

Gene: blr6041: D-lactate dehydrogenase, alternative
*
Bradyrhizobium sp. BTAi1

Site:
position = -98
score = 4.82138
sequence = AAATTGCATGCAATCT

Gene: BBta_5731: D-lactate dehydrogenase, alternative
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_2720: D-lactate dehydrogenase, alternative
D-lactate dehydrogenase, alternative
AZC_4683
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571

Gene: AZC_4683: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr6042: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 
Bradyrhizobium sp. BTAi1

Gene: BBta_5732: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 
Brucella melitensis 16M

Gene: BMEI0273: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 2
Mesorhizobium loti MAFF303099

Gene: msr9402: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol

Gene: mlr3780: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0298: Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
Uncharacterized protein, possibly involved in utilization of glycolate and propanediol
 
CRON 3.
blr4369
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*
Bradyrhizobium japonicum USDA 110

Site:
position = -104
score = 5.13436
sequence = AATTTGAATGCAAAAA

Site:
position = -42
score = 4.76092
sequence = ATTCTGCATTCAAAAA

Gene: blr4369: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Enoyl-CoA hydratase (EC 4.2.1.17)
blr4370
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4370: L-carnitine dehydratase/bile acid-inducible protein F
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
L-carnitine dehydratase/bile acid-inducible protein F
tctC
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4371: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b21120: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20771: Tricarboxylate transport protein TctC, periplasmic binding subunit
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0482: Tricarboxylate transport protein TctC, periplasmic binding subunit
Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4372: Tricarboxylate transport protein TctB, small permease component
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b21110: Tricarboxylate transport protein TctB, small permease component
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20770: Tricarboxylate transport protein TctB, small permease component
 
Xanthobacter autotrophicus Py2

Gene: Xaut_0483: Tricarboxylate transport protein TctB, small permease component
Tricarboxylate transport protein TctB, small permease component
tctA
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4373: Tricarboxylate transport membrane protein TctA, large permease component
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b21100: Tricarboxylate transport membrane protein TctA, large permease component
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20769: Tricarboxylate transport membrane protein TctA, large permease component
 
Xanthobacter autotrophicus Py2
Tricarboxylate transport membrane protein TctA, large permease component
blr4374
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110

Gene: blr4374: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234

Gene: NGR_b21130: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20772: 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
 
Xanthobacter autotrophicus Py2
4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262)
 
CRON 4.
Bll4368
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
*2
Bradyrhizobium japonicum USDA 110

Site:
position = -7
score = 4.76092
sequence = TTTTTGAATGCAGAAT

Site:
position = 55
score = 5.13436
sequence = TTTTTGCATTCAAATT

Gene: bll4368: Transcriptional regulator associated with tricarboxylic transport, GntR family

Site:
position = -82
score = 5.01526
sequence = ATTTTGCATTCATTTT

Gene: blr6040: Transcriptional regulator associated with tricarboxylic transport, GntR family
*
Bradyrhizobium sp. BTAi1

Site:
position = -100
score = 4.70294
sequence = TGATTGCATGCAATTT

Site:
position = -67
score = 4.29964
sequence = ATAACGAATTCATATA

Gene: BBta_5730: Transcriptional regulator associated with tricarboxylic transport, GntR family
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42
 
Rhizobium leguminosarum bv. viciae 3841
 
Rhizobium sp. NGR234
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
Transcriptional regulator associated with tricarboxylic transport, GntR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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