Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Bpet4349 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glycolate utilization; Lactate utilization
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N
Bordetella bronchiseptica RB50 4 3
Bordetella petrii DSM 12804 8 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Bpet4349
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -179
score = 4.05945
sequence = TATTGGTATACCAACT

Gene: BB4672: Transcriptional regulator associated with tricarboxylic transport, GntR family
*
Bordetella petrii DSM 12804

Site:
position = -13
score = 4.51375
sequence = TGTTTGTATACAAATG

Site:
position = -190
score = 5.3628
sequence = ATTTGGTATACAAAAT

Gene: Bpet4349: Transcriptional regulator associated with tricarboxylic transport, GntR family
Transcriptional regulator associated with tricarboxylic transport, GntR family
dld2
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet4348: D-lactate dehydrogenase, alternative
D-lactate dehydrogenase, alternative
 
CRON 2.
sgaA
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -35
score = 4.05945
sequence = AGTTGGTATACCAATA

Gene: BB4671: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
*
Bordetella petrii DSM 12804

Site:
position = -209
score = 4.51375
sequence = CATTTGTATACAAACA

Site:
position = -32
score = 5.3628
sequence = ATTTTGTATACCAAAT

Gene: Bpet4350: Serine--glyoxylate aminotransferase (EC 2.6.1.45)
Serine--glyoxylate aminotransferase (EC 2.6.1.45)
tctC
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet4351: Tricarboxylate transport protein TctC, periplasmic binding subunit
Tricarboxylate transport protein TctC, periplasmic binding subunit
tctB
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet4352: Tricarboxylate transport protein TctB, small permease component
Tricarboxylate transport protein TctB, small permease component
tctA
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50
 
Bordetella petrii DSM 12804

Gene: Bpet4353: Tricarboxylate transport membrane protein TctA, large permease component
Tricarboxylate transport membrane protein TctA, large permease component
Bpet4354
 
Bordetella avium 197N
*
Bordetella bronchiseptica RB50

Site:
position = -103
score = 3.97688
sequence = ATCTTGCATGTATGAT

Site:
position = -91
score = 4.13049
sequence = TGATTGCATTCAATCG

Gene: BB1501: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Bordetella petrii DSM 12804

Gene: Bpet4354: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
BB1502
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB1502: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
 
Bordetella petrii DSM 12804

Gene: Bpet4355: Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
Formyl-CoA transferase/acyl-CoA transferase/carnitine dehydratase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD