Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdhR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode: repressor
Biological process: Pyruvate metabolism
Effector: Pyruvate
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 109 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 9 4
Shewanella putrefaciens CN-32 12 5
Shewanella sp W3-18-1 12 5
Shewanella sp ANA-3 12 5
Shewanella sp MR-4 12 5
Shewanella sp MR-7 12 5
Shewanella baltica OS155 12 5
Shewanella denitrificans OS217 9 4
Shewanella frigidimarina NCIMB 400 12 5
Shewanella amazonensis SB2B 21 9
Shewanella loihica PV-4 14 6
Shewanella pealeana ATCC 700345 12 6
Shewanella halifaxensis HAW-EB4 11 5
Shewanella piezotolerans WP3 10 5
Shewanella sediminis HAW-EB3 13 6
Shewanella woodyi ATCC 51908 14 7
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldP
 
Shewanella oneidensis MR-1

Gene: SO_1522: L-lactate permease
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1272: L-lactate permease
 
Shewanella sp W3-18-1

Gene: Sputw3181_2834: L-lactate permease
 
Shewanella sp ANA-3

Gene: Shewana3_2904: L-lactate permease
 
Shewanella sp MR-4

Gene: Shewmr4_2734: L-lactate permease
 
Shewanella sp MR-7

Gene: Shewmr7_2807: L-lactate permease
 
Shewanella baltica OS155

Gene: Sbal_1354: L-lactate permease
 
Shewanella denitrificans OS217

Gene: Sden_2574: L-lactate permease
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2793: L-lactate permease
*
Shewanella amazonensis SB2B

Site:
position = -404
score = 5.95607
sequence = AATTGGTCTTACCAAAT

Gene: Sama_2439: L-lactate permease
*
Shewanella loihica PV-4

Site:
position = -478
score = 5.72221
sequence = AATTGGTAATACCTATT

Site:
position = -218
score = 4.88242
sequence = AACTGGTCAGACAAAGT

Gene: Shew_3135: L-lactate permease
 
Shewanella pealeana ATCC 700345

Gene: Spea_2994: L-lactate permease
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3083: L-lactate permease
 
Shewanella piezotolerans WP3

Gene: swp_1813: L-lactate permease
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0907: L-lactate permease
 
Shewanella woodyi ATCC 51908
L-lactate permease
dld
 
Shewanella oneidensis MR-1

Gene: SO_1521: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1271: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella sp W3-18-1

Gene: Sputw3181_2835: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella sp ANA-3

Gene: Shewana3_2905: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella sp MR-4

Gene: Shewmr4_2735: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella sp MR-7

Gene: Shewmr7_2808: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella baltica OS155

Gene: Sbal_1353: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2794: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella amazonensis SB2B

Gene: Sama_2440: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella loihica PV-4

Gene: Shew_3136: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella pealeana ATCC 700345

Gene: Spea_2995: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_3084: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella piezotolerans WP3

Gene: swp_1812: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0908: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
Shewanella woodyi ATCC 51908
Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
 
CRON 2.
oadG
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -246
score = 5.5907
sequence = ACATGGTAAGACCAATT

Gene: Sputcn32_1029: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella sp W3-18-1

Site:
position = -246
score = 5.5907
sequence = ACATGGTAAGACCAATT

Gene: Sputw3181_3136: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella sp ANA-3

Site:
position = -111
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewana3_3166: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella sp MR-4

Site:
position = -79
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewmr4_2987: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella sp MR-7

Site:
position = -110
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewmr7_3069: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella baltica OS155

Site:
position = -251
score = 6.11277
sequence = TATTGGTAAGACCAATT

Gene: Sbal_1024: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
 
Shewanella denitrificans OS217
*
Shewanella frigidimarina NCIMB 400

Site:
position = -299
score = 5.68901
sequence = TTTTGGTAAGACCAATT

Gene: Sfri_1065: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella amazonensis SB2B

Site:
position = -169
score = 6.11277
sequence = TATTGGTAAGACCAATT

Gene: Sama_1051: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella loihica PV-4

Site:
position = -202
score = 5.95607
sequence = ATTTGGTAAGACCAATT

Gene: Shew_1219: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella pealeana ATCC 700345

Site:
position = -195
score = 5.24752
sequence = TTATGGTATGACCAATT

Gene: Spea_1198: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -196
score = 4.74683
sequence = TTATGGTACGACCAATT

Gene: Shal_1235: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella piezotolerans WP3

Site:
position = -258
score = 6.11277
sequence = TATTGGTATGACCAATT

Gene: swp_1378: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella sediminis HAW-EB3

Site:
position = -148
score = 6.11277
sequence = TATTGGTATGACCAATT

Gene: Ssed_1320: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
*
Shewanella woodyi ATCC 51908

Site:
position = -243
score = 5.68901
sequence = TTTTGGTATGACCAATT

Gene: Swoo_3337: Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
Oxaloacetate decarboxylase gamma chain (EC 4.1.1.3)
oadA
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1030: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3135: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella sp ANA-3

Gene: Shewana3_3165: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella sp MR-4

Gene: Shewmr4_2986: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella sp MR-7

Gene: Shewmr7_3068: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella baltica OS155

Gene: Sbal_1025: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1066: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella amazonensis SB2B

Gene: Sama_1052: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella loihica PV-4

Gene: Shew_1220: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1199: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1236: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella piezotolerans WP3

Gene: swp_1379: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1321: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3336: Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
Oxaloacetate decarboxylase alpha chain (EC 4.1.1.3)
oadB
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1031: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3134: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella sp ANA-3

Gene: Shewana3_3164: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella sp MR-4

Gene: Shewmr4_2985: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella sp MR-7

Gene: Shewmr7_3067: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella baltica OS155

Gene: Sbal_1026: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1067: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella amazonensis SB2B

Gene: Sama_1053: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella loihica PV-4

Gene: Shew_1221: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1200: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1237: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella piezotolerans WP3

Gene: swp_1380: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1322: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3335: Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
Oxaloacetate decarboxylase beta chain (EC 4.1.1.3)
 
CRON 3.
deaD
 
Shewanella oneidensis MR-1

Gene: SO_4034: Cold-shock DEAD-box protein A
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_0637: Cold-shock DEAD-box protein A
 
Shewanella sp W3-18-1

Gene: Sputw3181_3537: Cold-shock DEAD-box protein A
 
Shewanella sp ANA-3

Gene: Shewana3_3595: Cold-shock DEAD-box protein A
 
Shewanella sp MR-4

Gene: Shewmr4_3424: Cold-shock DEAD-box protein A
 
Shewanella sp MR-7
 
Shewanella baltica OS155

Gene: Sbal_3757: Cold-shock DEAD-box protein A
 
Shewanella denitrificans OS217

Gene: Sden_3317: Cold-shock DEAD-box protein A
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3714: Cold-shock DEAD-box protein A
 
Shewanella amazonensis SB2B

Gene: Sama_0512: Cold-shock DEAD-box protein A
 
Shewanella loihica PV-4

Gene: Shew_0531: Cold-shock DEAD-box protein A
*
Shewanella pealeana ATCC 700345

Site:
position = -142
score = 6.3265
sequence = AATTGGTATTACCAATT

Gene: Spea_0566: Cold-shock DEAD-box protein A
*
Shewanella halifaxensis HAW-EB4

Site:
position = -142
score = 5.98855
sequence = GATTGGTATTACCAATT

Gene: Shal_0628: Cold-shock DEAD-box protein A
*
Shewanella piezotolerans WP3

Site:
position = -141
score = 5.88501
sequence = AAATGGTAATACCAATT

Gene: swp_4551: Cold-shock DEAD-box protein A
*
Shewanella sediminis HAW-EB3

Site:
position = -141
score = 6.3265
sequence = AATTGGTAATACCAATT

Gene: Ssed_4029: Cold-shock DEAD-box protein A
*
Shewanella woodyi ATCC 51908

Site:
position = -143
score = 6.3265
sequence = AATTGGTAATACCAATT

Gene: Swoo_0636: Cold-shock DEAD-box protein A
Cold-shock DEAD-box protein A
 
CRON 4.
pflX
 
Shewanella oneidensis MR-1
*
Shewanella putrefaciens CN-32

Site:
position = -202
score = 6.43316
sequence = AATTGGTCAGACCAATT

Gene: Sputcn32_2377: pyruvate formate lyase-related hypothetical transporter
*
Shewanella sp W3-18-1

Site:
position = -202
score = 6.43316
sequence = AATTGGTCAGACCAATT

Gene: Sputw3181_1632: pyruvate formate lyase-related hypothetical transporter
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
*
Shewanella denitrificans OS217

Site:
position = -180
score = 6.11277
sequence = AATTGGTCTTACCAATA

Gene: Sden_2405: pyruvate formate lyase-related hypothetical transporter
*
Shewanella frigidimarina NCIMB 400

Site:
position = -203
score = 5.76513
sequence = AATTGGTCTTACCAAGA

Gene: Sfri_2472: pyruvate formate lyase-related hypothetical transporter
*
Shewanella amazonensis SB2B

Site:
position = -180
score = 6.37983
sequence = AATTGGTATGACCAATT

Gene: Sama_1499: pyruvate formate lyase-related hypothetical transporter
*
Shewanella loihica PV-4

Site:
position = -205
score = 6.43316
sequence = AATTGGTCAGACCAATT

Gene: Shew_2389: pyruvate formate lyase-related hypothetical transporter
*
Shewanella pealeana ATCC 700345

Site:
position = -215
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Spea_1673: pyruvate formate lyase-related hypothetical transporter
*
Shewanella halifaxensis HAW-EB4

Site:
position = -216
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shal_2591: pyruvate formate lyase-related hypothetical transporter
*
Shewanella piezotolerans WP3

Site:
position = -215
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: swp_1953: pyruvate formate lyase-related hypothetical transporter
*
Shewanella sediminis HAW-EB3

Site:
position = -215
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Ssed_1709: pyruvate formate lyase-related hypothetical transporter
*
Shewanella woodyi ATCC 51908

Site:
position = -214
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Swoo_2882: pyruvate formate lyase-related hypothetical transporter
pyruvate formate lyase-related hypothetical transporter
 
CRON 5.
ppc
 
Shewanella oneidensis MR-1

Gene: SO_0274: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3718: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella sp W3-18-1

Gene: Sputw3181_3861: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella sp ANA-3

Gene: Shewana3_3906: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella sp MR-4

Gene: Shewmr4_3710: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella sp MR-7

Gene: Shewmr7_0235: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella baltica OS155

Gene: Sbal_4125: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella denitrificans OS217

Gene: Sden_0248: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0189: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
*
Shewanella amazonensis SB2B

Site:
position = -114
score = 5.82887
sequence = AATTGGACTGACCAATT

Gene: Sama_0254: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella loihica PV-4

Gene: Shew_0200: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0225: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_4095: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella piezotolerans WP3

Gene: swp_2053: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_4278: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0327: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
SO0273
 
Shewanella oneidensis MR-1

Gene: SO_0273: protein of unknown function DUF1439
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3719: protein of unknown function DUF1439
 
Shewanella sp W3-18-1

Gene: Sputw3181_3862: protein of unknown function DUF1439
 
Shewanella sp ANA-3

Gene: Shewana3_3907: protein of unknown function DUF1439
 
Shewanella sp MR-4

Gene: Shewmr4_3711: protein of unknown function DUF1439
 
Shewanella sp MR-7

Gene: Shewmr7_0234: protein of unknown function DUF1439
 
Shewanella baltica OS155

Gene: Sbal_4126: protein of unknown function DUF1439
 
Shewanella denitrificans OS217

Gene: Sden_0247: protein of unknown function DUF1439
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0188: protein of unknown function DUF1439
 
Shewanella amazonensis SB2B

Gene: Sama_0253: protein of unknown function DUF1439
 
Shewanella loihica PV-4

Gene: Shew_0199: protein of unknown function DUF1439
 
Shewanella pealeana ATCC 700345

Gene: Spea_0224: protein of unknown function DUF1439
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_4096: protein of unknown function DUF1439
 
Shewanella piezotolerans WP3

Gene: swp_2052: protein of unknown function DUF1439
 
Shewanella sediminis HAW-EB3

Gene: Ssed_4279: protein of unknown function DUF1439
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0326: protein of unknown function DUF1439
protein of unknown function DUF1439
 
CRON 6.
pflB
*
Shewanella oneidensis MR-1

Site:
position = -247
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: SO_2912: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella putrefaciens CN-32

Site:
position = -256
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Sputcn32_2378: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sp W3-18-1

Site:
position = -256
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Sputw3181_1631: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sp ANA-3

Site:
position = -246
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewana3_1555: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sp MR-4

Site:
position = -246
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewmr4_1494: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sp MR-7

Site:
position = -246
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shewmr7_1561: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella baltica OS155

Site:
position = -245
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Sbal_2671: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella denitrificans OS217

Site:
position = -165
score = 6.11277
sequence = AATTGGTCTTACCAATA

Gene: Sden_2406: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -216
score = 5.93834
sequence = AATTGGTCTTACCATTT

Gene: Sfri_2473: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella amazonensis SB2B

Site:
position = -163
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Sama_1498: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella loihica PV-4

Site:
position = -242
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shew_2390: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella pealeana ATCC 700345

Site:
position = -229
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Spea_1672: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -238
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Shal_2592: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella piezotolerans WP3

Site:
position = -222
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: swp_1952: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella sediminis HAW-EB3

Site:
position = -240
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Ssed_1708: Pyruvate formate-lyase (EC 2.3.1.54)
*
Shewanella woodyi ATCC 51908

Site:
position = -235
score = 6.37983
sequence = AATTGGTCTTACCAATT

Gene: Swoo_2883: Pyruvate formate-lyase (EC 2.3.1.54)
Pyruvate formate-lyase (EC 2.3.1.54)
pflA
 
Shewanella oneidensis MR-1

Gene: SO_2913: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2379: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1630: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp ANA-3

Gene: Shewana3_1554: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp MR-4

Gene: Shewmr4_1493: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sp MR-7

Gene: Shewmr7_1560: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella baltica OS155

Gene: Sbal_2672: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella denitrificans OS217

Gene: Sden_2407: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2474: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella amazonensis SB2B

Gene: Sama_1497: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella loihica PV-4

Gene: Shew_2391: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella pealeana ATCC 700345

Gene: Spea_1671: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2593: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella piezotolerans WP3

Gene: swp_1951: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1707: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2884: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
 
CRON 7.
pdhR
*
Shewanella oneidensis MR-1

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -175
score = 4.52151
sequence = TAATGGTCTGACCCCTT

Gene: SO_0423: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella putrefaciens CN-32

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -194
score = 4.36481
sequence = AAATGGTCTGACCCCAT

Gene: Sputcn32_3418: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella sp W3-18-1

Site:
position = -194
score = 4.36481
sequence = AAATGGTCTGACCCCAT

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Sputw3181_0525: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella sp ANA-3

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Shewana3_0425: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella sp MR-4

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -175
score = 4.36481
sequence = AAATGGTCTGACCCCAT

Gene: Shewmr4_0427: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella sp MR-7

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -175
score = 4.36481
sequence = AAATGGTCTGACCCCAT

Gene: Shewmr7_3600: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella baltica OS155

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -175
score = 4.36481
sequence = AAATGGTCTGACCCCAT

Gene: Sbal_3914: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella denitrificans OS217

Site:
position = -185
score = 4.78857
sequence = AAATGGTCTGACCCCTT

Site:
position = -38
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Sden_3384: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella frigidimarina NCIMB 400

Site:
position = -49
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -186
score = 4.78857
sequence = AAATGGTCTGACCCCTT

Gene: Sfri_3778: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella amazonensis SB2B

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -152
score = 4.8063
sequence = AATTGGTCTGACCCCAT

Gene: Sama_0374: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella loihica PV-4

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Shew_3432: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella pealeana ATCC 700345

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -158
score = 4.2349
sequence = CATTGGTCAGACCCCAT

Gene: Spea_0418: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella halifaxensis HAW-EB4

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -157
score = 4.3916
sequence = CATTGGTCTGACCCCTA

Gene: Shal_0475: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella piezotolerans WP3

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -158
score = 4.2349
sequence = CATTGGTCTGACCCCAT

Gene: swp_4753: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella sediminis HAW-EB3

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Site:
position = -158
score = 4.52151
sequence = TAATGGTCAGACCCCTT

Gene: Ssed_0430: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
*
Shewanella woodyi ATCC 51908

Site:
position = -159
score = 4.25445
sequence = TAATGGTCTGACCGCTA

Site:
position = -39
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Swoo_0318: Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
Transcriptional repressor for pyruvate dehydrogenase complex, GntR family
aceE
 
Shewanella oneidensis MR-1

Gene: SO_0424: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3417: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0526: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella sp ANA-3

Gene: Shewana3_0426: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella sp MR-4

Gene: Shewmr4_0428: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella sp MR-7

Gene: Shewmr7_3599: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella baltica OS155

Gene: Sbal_3913: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella denitrificans OS217

Gene: Sden_3383: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3777: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella amazonensis SB2B

Gene: Sama_0375: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella loihica PV-4

Gene: Shew_3431: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0419: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0476: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella piezotolerans WP3

Gene: swp_4752: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0431: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0319: Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
Pyruvate dehydrogenase E1 component (EC 1.2.4.1)
aceF
 
Shewanella oneidensis MR-1

Gene: SO_0425: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3416: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0527: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella sp ANA-3

Gene: Shewana3_0427: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella sp MR-4

Gene: Shewmr4_0429: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella sp MR-7

Gene: Shewmr7_3598: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella baltica OS155

Gene: Sbal_3912: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella denitrificans OS217

Gene: Sden_3382: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3776: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella amazonensis SB2B

Gene: Sama_0376: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella loihica PV-4

Gene: Shew_3430: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0420: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0477: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella piezotolerans WP3

Gene: swp_4751: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0432: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0320: Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex (EC 2.3.1.12)
lpdA
 
Shewanella oneidensis MR-1

Gene: SO_0426: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3415: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0528: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella sp ANA-3

Gene: Shewana3_0428: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella sp MR-4

Gene: Shewmr4_0430: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella sp MR-7

Gene: Shewmr7_3597: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella baltica OS155

Gene: Sbal_3911: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella denitrificans OS217

Gene: Sden_3381: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_3775: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella amazonensis SB2B

Gene: Sama_0377: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella loihica PV-4

Gene: Shew_3429: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella pealeana ATCC 700345

Gene: Spea_0421: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0478: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella piezotolerans WP3

Gene: swp_4749: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0433: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0321: Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) @ Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
 
CRON 8.
aceB
*
Shewanella oneidensis MR-1

Site:
position = -214
score = 5.74234
sequence = TGTTGGTCAGACCAATT

Site:
position = -306
score = 4.62577
sequence = AAGTTGTCTGACAAATT

Gene: SO_1483: Malate synthase (EC 2.3.3.9)
*
Shewanella putrefaciens CN-32

Site:
position = -145
score = 5.67145
sequence = GTTTGGTCTGACCAATT

Gene: Sputcn32_1238: Malate synthase (EC 2.3.3.9)
*
Shewanella sp W3-18-1

Site:
position = -144
score = 5.67145
sequence = GTTTGGTCTGACCAATT

Gene: Sputw3181_2866: Malate synthase (EC 2.3.3.9)
*
Shewanella sp ANA-3

Site:
position = -214
score = 5.81846
sequence = TCTTGGTCAGACCAATT

Site:
position = -306
score = 4.62577
sequence = AAGTTGTCTGACAAATT

Gene: Shewana3_2943: Malate synthase (EC 2.3.3.9)
*
Shewanella sp MR-4

Site:
position = -306
score = 4.62577
sequence = AAGTTGTCTGACAAATT

Site:
position = -214
score = 5.81846
sequence = TCTTGGTCAGACCAATT

Gene: Shewmr4_2767: Malate synthase (EC 2.3.3.9)
*
Shewanella sp MR-7

Site:
position = -306
score = 4.62577
sequence = AAGTTGTCTGACAAATT

Site:
position = -214
score = 5.81846
sequence = TCTTGGTCAGACCAATT

Gene: Shewmr7_2845: Malate synthase (EC 2.3.3.9)
*
Shewanella baltica OS155

Site:
position = -221
score = 5.74757
sequence = GCTTGGTCAGACCAATT

Gene: Sbal_1316: Malate synthase (EC 2.3.3.9)
*
Shewanella denitrificans OS217

Site:
position = -258
score = 5.46079
sequence = CCTTGGTCATACCAATT

Site:
position = -166
score = 5.69424
sequence = GCTTGGTCTTACCAATT

Gene: Sden_1245: Malate synthase (EC 2.3.3.9)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -299
score = 5.24752
sequence = TGTTGGTAAGACCATTT

Gene: Sfri_1101: Malate synthase (EC 2.3.3.9)
*
Shewanella amazonensis SB2B

Site:
position = -298
score = 5.08471
sequence = TGTTGGTAAGACAAATT

Site:
position = -205
score = 5.67145
sequence = GTTTGGTCTGACCAATT

Gene: Sama_2381: Malate synthase (EC 2.3.3.9)
*
Shewanella loihica PV-4

Site:
position = -233
score = 5.61811
sequence = GTTTGGTCTTACCAATT

Gene: Shew_1275: Malate synthase (EC 2.3.3.9)
*
Shewanella pealeana ATCC 700345

Site:
position = -349
score = 4.57243
sequence = AATTTGTCTTACAAGTT

Gene: Spea_1290: Malate synthase (EC 2.3.3.9)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_1352: Malate synthase (EC 2.3.3.9)
 
Shewanella piezotolerans WP3

Gene: swp_1433: Malate synthase (EC 2.3.3.9)
*
Shewanella sediminis HAW-EB3

Site:
position = -215
score = 5.60039
sequence = GATTGGTCATACCATTT

Site:
position = -305
score = 4.65318
sequence = CATTTGTCTGACAAATT

Gene: Ssed_1414: Malate synthase (EC 2.3.3.9)
*
Shewanella woodyi ATCC 51908

Site:
position = -335
score = 5.22458
sequence = AATTTGTCTGACAAATT

Gene: Swoo_1528: Malate synthase (EC 2.3.3.9)
Malate synthase (EC 2.3.3.9)
aceA
 
Shewanella oneidensis MR-1

Gene: SO_1484: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1239: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella sp W3-18-1

Gene: Sputw3181_2865: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella sp ANA-3

Gene: Shewana3_2942: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella sp MR-4

Gene: Shewmr4_2766: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella sp MR-7

Gene: Shewmr7_2844: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella baltica OS155

Gene: Sbal_1317: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella denitrificans OS217

Gene: Sden_1246: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_1102: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella amazonensis SB2B

Gene: Sama_2380: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella loihica PV-4

Gene: Shew_1276: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1415: Isocitrate lyase (EC 4.1.3.1)
 
Shewanella woodyi ATCC 51908
Isocitrate lyase (EC 4.1.3.1)
 
CRON 9.
Swoo_2881
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3
 
Shewanella sp MR-4
 
Shewanella sp MR-7
 
Shewanella baltica OS155
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -351
score = 6.37983
sequence = AATTGGTAAGACCAATT

Gene: Swoo_2881: hypothetical protein
hypothetical protein
focA
*
Shewanella oneidensis MR-1

Site:
position = -280
score = 6.37983
sequence = AATTGGTATGACCAATT

Gene: SO_2911: formate transporter
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2376: formate transporter
 
Shewanella sp W3-18-1

Gene: Sputw3181_1633: formate transporter
*
Shewanella sp ANA-3

Site:
position = -253
score = 6.37983
sequence = AATTGGTATGACCAATT

Gene: Shewana3_1556: formate transporter
*
Shewanella sp MR-4

Site:
position = -254
score = 6.37983
sequence = AATTGGTATGACCAATT

Gene: Shewmr4_1495: formate transporter
*
Shewanella sp MR-7

Site:
position = -254
score = 6.37983
sequence = AATTGGTATGACCAATT

Gene: Shewmr7_1562: formate transporter
*
Shewanella baltica OS155

Site:
position = -254
score = 6.11277
sequence = TATTGGTAAGACCAATT

Gene: Sbal_2670: formate transporter
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2470: formate transporter
 
Shewanella amazonensis SB2B

Gene: Sama_1500: formate transporter
 
Shewanella loihica PV-4

Gene: Shew_2388: formate transporter
 
Shewanella pealeana ATCC 700345

Gene: Spea_1674: formate transporter
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2590: formate transporter
 
Shewanella piezotolerans WP3

Gene: swp_1954: formate transporter
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1710: formate transporter
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2880: formate transporter
formate transporter
 
CRON 10.
sdhC
 
Shewanella oneidensis MR-1

Gene: SO_1927: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2273: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_1735: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1706: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella sp MR-4

Gene: Shewmr4_1631: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella sp MR-7

Gene: Shewmr7_1706: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella baltica OS155

Gene: Sbal_2519: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella denitrificans OS217

Gene: Sden_2187: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2347: succinate dehydrogenase, cytochrome b556 subunit
*
Shewanella amazonensis SB2B

Site:
position = -293
score = 5.56181
sequence = TATAGGTCTGACCAATT

Gene: Sama_1423: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella loihica PV-4

Gene: Shew_1651: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_1784: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2493: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella piezotolerans WP3

Gene: swp_2955: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2818: succinate dehydrogenase, cytochrome b556 subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1833: succinate dehydrogenase, cytochrome b556 subunit
succinate dehydrogenase, cytochrome b556 subunit
sdhD
 
Shewanella oneidensis MR-1

Gene: SO_1927.1: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2272: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_1736: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella sp ANA-3

Gene: Shewana3_1707: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella sp MR-4

Gene: Shewmr4_1632: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella sp MR-7

Gene: Shewmr7_1707: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella baltica OS155

Gene: Sbal_2518: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella denitrificans OS217

Gene: Sden_2186: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2346: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella amazonensis SB2B

Gene: Sama_1424: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella loihica PV-4

Gene: Shew_1652: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_1785: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2492: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella piezotolerans WP3

Gene: swp_2953: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2817: succinate dehydrogenase, hydrophobic membrane anchor protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1834: succinate dehydrogenase, hydrophobic membrane anchor protein
succinate dehydrogenase, hydrophobic membrane anchor protein
sdhA
 
Shewanella oneidensis MR-1

Gene: SO_1928: succinate dehydrogenase, flavoprotein subunit
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2271: succinate dehydrogenase, flavoprotein subunit
 
Shewanella sp W3-18-1

Gene: Sputw3181_1737: succinate dehydrogenase, flavoprotein subunit
 
Shewanella sp ANA-3

Gene: Shewana3_1708: succinate dehydrogenase, flavoprotein subunit
 
Shewanella sp MR-4

Gene: Shewmr4_1633: succinate dehydrogenase, flavoprotein subunit
 
Shewanella sp MR-7

Gene: Shewmr7_1708: succinate dehydrogenase, flavoprotein subunit
 
Shewanella baltica OS155

Gene: Sbal_2517: succinate dehydrogenase, flavoprotein subunit
 
Shewanella denitrificans OS217

Gene: Sden_2185: succinate dehydrogenase, flavoprotein subunit
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2345: succinate dehydrogenase, flavoprotein subunit
 
Shewanella amazonensis SB2B

Gene: Sama_1425: succinate dehydrogenase, flavoprotein subunit
 
Shewanella loihica PV-4

Gene: Shew_1653: succinate dehydrogenase, flavoprotein subunit
 
Shewanella pealeana ATCC 700345

Gene: Spea_1786: succinate dehydrogenase, flavoprotein subunit
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2491: succinate dehydrogenase, flavoprotein subunit
 
Shewanella piezotolerans WP3

Gene: swp_2952: succinate dehydrogenase, flavoprotein subunit
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2816: succinate dehydrogenase, flavoprotein subunit
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1835: succinate dehydrogenase, flavoprotein subunit
succinate dehydrogenase, flavoprotein subunit
sdhB
 
Shewanella oneidensis MR-1

Gene: SO_1929: succinate dehydrogenase, iron-sulfur protein
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2270: succinate dehydrogenase, iron-sulfur protein
 
Shewanella sp W3-18-1

Gene: Sputw3181_1738: succinate dehydrogenase, iron-sulfur protein
 
Shewanella sp ANA-3

Gene: Shewana3_1709: succinate dehydrogenase, iron-sulfur protein
 
Shewanella sp MR-4

Gene: Shewmr4_1634: succinate dehydrogenase, iron-sulfur protein
 
Shewanella sp MR-7

Gene: Shewmr7_1709: succinate dehydrogenase, iron-sulfur protein
 
Shewanella baltica OS155

Gene: Sbal_2516: succinate dehydrogenase, iron-sulfur protein
 
Shewanella denitrificans OS217

Gene: Sden_2184: succinate dehydrogenase, iron-sulfur protein
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2344: succinate dehydrogenase, iron-sulfur protein
 
Shewanella amazonensis SB2B

Gene: Sama_1426: succinate dehydrogenase, iron-sulfur protein
 
Shewanella loihica PV-4

Gene: Shew_1654: succinate dehydrogenase, iron-sulfur protein
 
Shewanella pealeana ATCC 700345

Gene: Spea_1787: succinate dehydrogenase, iron-sulfur protein
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2490: succinate dehydrogenase, iron-sulfur protein
 
Shewanella piezotolerans WP3

Gene: swp_2950: succinate dehydrogenase, iron-sulfur protein
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2815: succinate dehydrogenase, iron-sulfur protein
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1836: succinate dehydrogenase, iron-sulfur protein
succinate dehydrogenase, iron-sulfur protein
 
CRON 11.
gltA
 
Shewanella oneidensis MR-1

Gene: SO_1926: citrate synthase
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2274: citrate synthase
 
Shewanella sp W3-18-1

Gene: Sputw3181_1734: citrate synthase
 
Shewanella sp ANA-3

Gene: Shewana3_1705: citrate synthase
 
Shewanella sp MR-4

Gene: Shewmr4_1630: citrate synthase
 
Shewanella sp MR-7

Gene: Shewmr7_1705: citrate synthase
 
Shewanella baltica OS155

Gene: Sbal_2520: citrate synthase
 
Shewanella denitrificans OS217

Gene: Sden_2189: citrate synthase
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2348: citrate synthase
*
Shewanella amazonensis SB2B

Site:
position = -136
score = 5.56181
sequence = AATTGGTCAGACCTATA

Gene: Sama_1422: citrate synthase
 
Shewanella loihica PV-4

Gene: Shew_1650: citrate synthase
 
Shewanella pealeana ATCC 700345

Gene: Spea_1783: citrate synthase
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2494: citrate synthase
 
Shewanella piezotolerans WP3

Gene: swp_2957: citrate synthase
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2819: citrate synthase
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1832: citrate synthase
citrate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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