Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GabR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Gamma-aminobutyrate utilization
Effector: Gamma-aminobutyric acid
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 2 1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2 7 1
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236 7 1
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
puuD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1740: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1900: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
*
Polaromonas naphthalenivorans CJ2

Site:
position = -153
score = 12.7774
sequence = AGTGGCAC-(15)-AATGGCAC-(7)-GACCCAAT

Gene: Pnap_2865: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
 
Polaromonas sp. JS666
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -84
score = 12.4388
sequence = AGTGGCAC-(15)-ACCGGCCC-(7)-GAACCAAT

Gene: Rfer_0349: Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Gamma-glutamyl-gamma-aminobutyrate hydrolase (EC 3.5.1.94)
puuA
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1739: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1901: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2864: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0350: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0825: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11)
gatP
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1738: Gamma-aminobutyrate transaminase (EC 2.6.1.96)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1902: Gamma-aminobutyrate transaminase (EC 2.6.1.96)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2863: Gamma-aminobutyrate transaminase (EC 2.6.1.96)
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0351: Gamma-aminobutyrate transaminase (EC 2.6.1.96)
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0824: Gamma-aminobutyrate transaminase (EC 2.6.1.96)
Gamma-aminobutyrate transaminase (EC 2.6.1.96)
puuO
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1736: Predicted putrescine ABC transporter, periplasmic binding protein
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1903: Predicted putrescine ABC transporter, periplasmic binding protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2862: Predicted putrescine ABC transporter, periplasmic binding protein
 
Polaromonas sp. JS666

Gene: Bpro_2095: Predicted putrescine ABC transporter, periplasmic binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0352: Predicted putrescine ABC transporter, periplasmic binding protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1698: Predicted putrescine ABC transporter, periplasmic binding protein
Predicted putrescine ABC transporter, periplasmic binding protein
puuL
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1735: Predicted putrescine ABC transporter, ATP-binding protein
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1904: Predicted putrescine ABC transporter, ATP-binding protein
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2861: Predicted putrescine ABC transporter, ATP-binding protein
 
Polaromonas sp. JS666

Gene: Bpro_2096: Predicted putrescine ABC transporter, ATP-binding protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0353: Predicted putrescine ABC transporter, ATP-binding protein
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0823: Predicted putrescine ABC transporter, ATP-binding protein
Predicted putrescine ABC transporter, ATP-binding protein
puuM
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1734: Predicted putrescine ABC transporter, permease component
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1905: Predicted putrescine ABC transporter, permease component
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2860: Predicted putrescine ABC transporter, permease component
 
Polaromonas sp. JS666

Gene: Bpro_2097: Predicted putrescine ABC transporter, permease component
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0354: Predicted putrescine ABC transporter, permease component
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0822: Predicted putrescine ABC transporter, permease component
Predicted putrescine ABC transporter, permease component
puuN
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_1733: Predicted putrescine ABC transporter, permease component
 
Methylibium petroleiphilum PM1

Gene: Mpe_A1906: Predicted putrescine ABC transporter, permease component
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2859: Predicted putrescine ABC transporter, permease component
 
Polaromonas sp. JS666

Gene: Bpro_2098: Predicted putrescine ABC transporter, permease component
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_0355: Predicted putrescine ABC transporter, permease component
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0821: Predicted putrescine ABC transporter, permease component
Predicted putrescine ABC transporter, permease component
 
CRON 2.
gabT
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -97
score = 12.836
sequence = ATTGGCAC-(16)-GATGGCTC-(8)-GAACCAAT

Gene: Daci_5049: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19)
gabD
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_5050: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD