Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NtrC - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Nitrogen assimilation
Effector: Phosphorylated NtrB, signal histidine kinase
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 94 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 6 4
Shewanella putrefaciens CN-32 6 4
Shewanella sp W3-18-1 6 4
Shewanella sp ANA-3 7 4
Shewanella sp MR-4 7 4
Shewanella sp MR-7 7 4
Shewanella baltica OS155 7 4
Shewanella denitrificans OS217 5 3
Shewanella frigidimarina NCIMB 400 5 3
Shewanella amazonensis SB2B 5 3
Shewanella loihica PV-4 5 3
Shewanella pealeana ATCC 700345 5 3
Shewanella halifaxensis HAW-EB4 5 3
Shewanella piezotolerans WP3 5 3
Shewanella sediminis HAW-EB3 5 3
Shewanella woodyi ATCC 51908 7 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnK2
*
Shewanella oneidensis MR-1

Site:
position = -181
score = 5.29806
sequence = TGCACCAAAATCGCGCA

Site:
position = -168
score = 4.8082
sequence = CGCACCAAATCAGGGCA

Gene: SO_3819: nitrogen regulatory protein P-II
*
Shewanella putrefaciens CN-32

Site:
position = -96
score = 5.66249
sequence = TGCACCTGTATGGTGCA

Site:
position = -109
score = 4.55667
sequence = TGCACTGAAATAATGCA

Gene: Sputcn32_0815: nitrogen regulatory protein P-II
*
Shewanella sp W3-18-1

Site:
position = -109
score = 4.98149
sequence = TGCACCGAAATAATGCA

Site:
position = -96
score = 5.38637
sequence = TGCACCTATATGGAGCA

Gene: Sputw3181_3358: nitrogen regulatory protein P-II
*
Shewanella sp ANA-3

Site:
position = -182
score = 4.75393
sequence = TGCACCATCACAGCGCA

Site:
position = -169
score = 5.00371
sequence = CGCACCAAATCGGGGCG

Gene: Shewana3_0779: nitrogen regulatory protein P-II
*
Shewanella sp MR-4

Site:
position = -182
score = 4.75393
sequence = TGCACCATCACAGCGCA

Site:
position = -169
score = 5.00371
sequence = CGCACCAAATCGGGGCG

Gene: Shewmr4_3159: nitrogen regulatory protein P-II
*
Shewanella sp MR-7

Site:
position = -169
score = 5.00371
sequence = CGCACCAAATCGGGGCG

Gene: Shewmr7_0808: nitrogen regulatory protein P-II
*
Shewanella baltica OS155

Site:
position = -168
score = 4.57888
sequence = CGCACCAAATCAGGGCG

Gene: Sbal_0707: nitrogen regulatory protein P-II
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
*
Shewanella woodyi ATCC 51908

Site:
position = -140
score = 5.2445
sequence = TGCACCATGGTGATGCA

Gene: Swoo_1181: nitrogen regulatory protein P-II
nitrogen regulatory protein P-II
amtB2
 
Shewanella oneidensis MR-1
 
Shewanella putrefaciens CN-32
 
Shewanella sp W3-18-1
 
Shewanella sp ANA-3

Gene: Shewana3_0778: ammonium transporter
 
Shewanella sp MR-4

Gene: Shewmr4_3160: ammonium transporter
 
Shewanella sp MR-7

Gene: Shewmr7_0807: ammonium transporter
 
Shewanella baltica OS155

Gene: Sbal_0706: ammonium transporter
 
Shewanella denitrificans OS217
 
Shewanella frigidimarina NCIMB 400
 
Shewanella amazonensis SB2B
 
Shewanella loihica PV-4
 
Shewanella pealeana ATCC 700345
 
Shewanella halifaxensis HAW-EB4
 
Shewanella piezotolerans WP3
 
Shewanella sediminis HAW-EB3
 
Shewanella woodyi ATCC 51908

Gene: Swoo_1182: ammonium transporter
ammonium transporter
 
CRON 2.
glnB
*
Shewanella oneidensis MR-1

Site:
position = -142
score = 5.45331
sequence = TGCACAATTCTGGTGCA

Gene: SO_0761: nitrogen regulatory protein P-II 1
*
Shewanella putrefaciens CN-32

Site:
position = -143
score = 5.50208
sequence = TGCACAAATGTGGTGCA

Gene: Sputcn32_3241: nitrogen regulatory protein P-II 1
*
Shewanella sp W3-18-1

Site:
position = -143
score = 5.50208
sequence = TGCACAAATGTGGTGCA

Gene: Sputw3181_0700: nitrogen regulatory protein P-II 1
*
Shewanella sp ANA-3

Site:
position = -143
score = 5.21702
sequence = TGCACAAGTCTGGTGCA

Gene: Shewana3_3532: nitrogen regulatory protein P-II 1
*
Shewanella sp MR-4

Site:
position = -143
score = 5.21702
sequence = TGCACAAGTCTGGTGCA

Gene: Shewmr4_3362: nitrogen regulatory protein P-II 1
*
Shewanella sp MR-7

Site:
position = -143
score = 5.21702
sequence = TGCACAAGTCTGGTGCA

Gene: Shewmr7_0591: nitrogen regulatory protein P-II 1
*
Shewanella baltica OS155

Site:
position = -144
score = 5.06323
sequence = TGCTCGATCATGGTGCA

Gene: Sbal_0797: nitrogen regulatory protein P-II 1
*
Shewanella denitrificans OS217

Site:
position = -152
score = 5.71823
sequence = CGCACCTTATTGGTGCA

Site:
position = -195
score = 5.15008
sequence = TGCGCCACTTAGGTGCA

Gene: Sden_2905: nitrogen regulatory protein P-II 1
*
Shewanella frigidimarina NCIMB 400

Site:
position = -183
score = 5.40632
sequence = TGCACCAAAACGATGCA

Gene: Sfri_0623: nitrogen regulatory protein P-II 1
*
Shewanella amazonensis SB2B

Site:
position = -172
score = 5.63239
sequence = TGCACCACCTTGGTGCG

Site:
position = -142
score = 4.74771
sequence = TGCACTTTTTTTGTGCG

Gene: Sama_0650: nitrogen regulatory protein P-II 1
*
Shewanella loihica PV-4

Site:
position = -172
score = 4.52304
sequence = TGCGCTATTTTTGTGCG

Site:
position = -142
score = 5.76699
sequence = CGCACCTAATTGGTGCA

Gene: Shew_0846: nitrogen regulatory protein P-II 1
*
Shewanella pealeana ATCC 700345

Site:
position = -135
score = 5.47643
sequence = TGCACCTTGCTGGTGCA

Gene: Spea_0833: nitrogen regulatory protein P-II 1
*
Shewanella halifaxensis HAW-EB4

Site:
position = -137
score = 4.69778
sequence = CGCACTCGAATGGTGCA

Gene: Shal_0888: nitrogen regulatory protein P-II 1
*
Shewanella piezotolerans WP3

Site:
position = -136
score = 5.4007
sequence = TGCACCCGATTGGTGCA

Gene: swp_3956: nitrogen regulatory protein P-II 1
*
Shewanella sediminis HAW-EB3

Site:
position = -151
score = 5.05711
sequence = CGCACTTGTTTGGTGCA

Gene: Ssed_0933: nitrogen regulatory protein P-II 1
*
Shewanella woodyi ATCC 51908

Site:
position = -143
score = 5.44014
sequence = CGCACCTTAATGGTGCG

Site:
position = -173
score = 4.61269
sequence = TGCGCTAATTCCGTGCA

Gene: Swoo_0979: nitrogen regulatory protein P-II 1
nitrogen regulatory protein P-II 1
amtB
 
Shewanella oneidensis MR-1

Gene: SO_0760: ammonium transporter
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_3240: ammonium transporter
 
Shewanella sp W3-18-1

Gene: Sputw3181_0701: ammonium transporter
 
Shewanella sp ANA-3

Gene: Shewana3_3531: ammonium transporter
 
Shewanella sp MR-4

Gene: Shewmr4_3361: ammonium transporter
 
Shewanella sp MR-7

Gene: Shewmr7_0592: ammonium transporter
 
Shewanella baltica OS155

Gene: Sbal_0798: ammonium transporter
 
Shewanella denitrificans OS217

Gene: Sden_2904: ammonium transporter
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0624: ammonium transporter
 
Shewanella amazonensis SB2B

Gene: Sama_0651: ammonium transporter
 
Shewanella loihica PV-4

Gene: Shew_0847: ammonium transporter
 
Shewanella pealeana ATCC 700345

Gene: Spea_0834: ammonium transporter
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0889: ammonium transporter
 
Shewanella piezotolerans WP3

Gene: swp_3955: ammonium transporter
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0934: ammonium transporter
 
Shewanella woodyi ATCC 51908

Gene: Swoo_0980: ammonium transporter
ammonium transporter
 
CRON 3.
glnA
*
Shewanella oneidensis MR-1

Site:
position = -246
score = 4.60776
sequence = TGCACTAAAATGGGGGA

Site:
position = -179
score = 5.36387
sequence = TGCACCAACACAGTGCA

Gene: SO_4410: glutamine synthetase, type I
*
Shewanella putrefaciens CN-32

Site:
position = -184
score = 5.39509
sequence = CGCACCATCATAGTGCA

Gene: Sputcn32_0412: glutamine synthetase, type I
*
Shewanella sp W3-18-1

Site:
position = -184
score = 5.58115
sequence = CGCACCATTATAGTGCA

Gene: Sputw3181_0266: glutamine synthetase, type I
*
Shewanella sp ANA-3

Site:
position = -247
score = 4.6402
sequence = TGCACTAAAATGGTGTT

Site:
position = -180
score = 5.62991
sequence = CGCACCAATATAGTGCA

Gene: Shewana3_0300: glutamine synthetase, type I
*
Shewanella sp MR-4

Site:
position = -180
score = 5.75533
sequence = AGCACCAATATGGTGCA

Site:
position = -247
score = 4.6402
sequence = TGCACTAAAATGGTGTT

Gene: Shewmr4_0305: glutamine synthetase, type I
*
Shewanella sp MR-7

Site:
position = -183
score = 5.56927
sequence = AGCACCAACATGGTGCA

Gene: Shewmr7_3719: glutamine synthetase, type I
*
Shewanella baltica OS155

Site:
position = -183
score = 5.47027
sequence = AGCACCATAGTGGTGCA

Gene: Sbal_0306: glutamine synthetase, type I
*
Shewanella denitrificans OS217

Site:
position = -228
score = 5.01626
sequence = TGCACCATTATGGTGAT

Site:
position = -251
score = 5.69668
sequence = TGCACCATAACGGTGCG

Gene: Sden_3454: glutamine synthetase, type I
*
Shewanella frigidimarina NCIMB 400

Site:
position = -197
score = 5.43688
sequence = TGCACGAGGTTGGTGCA

Gene: Sfri_0325: glutamine synthetase, type I
*
Shewanella amazonensis SB2B

Site:
position = -192
score = 5.46235
sequence = TGCCCCGATTTGGTGCA

Site:
position = -214
score = 5.09366
sequence = CGCACCAACATTGTGCG

Site:
position = -244
score = 4.90552
sequence = TGCACCTTTATCATGCA

Gene: Sama_3416: glutamine synthetase, type I
*
Shewanella loihica PV-4

Site:
position = -178
score = 5.89879
sequence = TGCACCTTTATGGTGCA

Site:
position = -217
score = 5.36444
sequence = CGCACCATATTGGTGAA

Gene: Shew_3554: glutamine synthetase, type I
*
Shewanella pealeana ATCC 700345

Site:
position = -202
score = 4.68881
sequence = TGCACCATATAGATCCA

Site:
position = -180
score = 5.82542
sequence = CGCACCAAAATGGTGCG

Gene: Spea_3916: glutamine synthetase, type I
*
Shewanella halifaxensis HAW-EB4

Site:
position = -180
score = 5.40059
sequence = CGCACCAAAATAGTGCG

Gene: Shal_0353: glutamine synthetase, type I
*
Shewanella piezotolerans WP3

Site:
position = -218
score = 4.68085
sequence = TGCACGATTATGAAGCA

Site:
position = -201
score = 4.796
sequence = CGCACCAAAATGATCCA

Site:
position = -179
score = 4.93408
sequence = CGCACCATTAGAGTGCA

Gene: swp_0268: glutamine synthetase, type I
*
Shewanella sediminis HAW-EB3

Site:
position = -227
score = 4.71276
sequence = CGCACCAGCTTGGTGAG

Site:
position = -188
score = 5.49262
sequence = CGCACCAACTTAGTGCA

Gene: Ssed_0292: glutamine synthetase, type I
*
Shewanella woodyi ATCC 51908

Site:
position = -216
score = 4.664
sequence = CGCACCAGGATGGTGAG

Site:
position = -199
score = 5.01997
sequence = CGCACCATTATCGGGCA

Site:
position = -177
score = 5.39362
sequence = CGCACCAAACTAGTGCA

Gene: Swoo_4643: glutamine synthetase, type I
glutamine synthetase, type I
 
CRON 4.
ntrB
*
Shewanella oneidensis MR-1

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Site:
position = -39
score = 4.90145
sequence = TGCAACATAAGGGTGCA

Gene: SO_4471: nitrogen regulation protein
*
Shewanella putrefaciens CN-32

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Site:
position = -39
score = 4.96112
sequence = TGCATCATGTTGATGCA

Gene: Sputcn32_0372: nitrogen regulation protein
*
Shewanella sp W3-18-1

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Site:
position = -39
score = 4.96112
sequence = TGCATCATGTTGATGCA

Gene: Sputw3181_0222: nitrogen regulation protein
*
Shewanella sp ANA-3

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Site:
position = -39
score = 5.54852
sequence = TGCAACATAATGGTGCA

Gene: Shewana3_0259: nitrogen regulation protein
*
Shewanella sp MR-4

Site:
position = -39
score = 5.54852
sequence = TGCAACATAATGGTGCA

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Gene: Shewmr4_0258: nitrogen regulation protein
*
Shewanella sp MR-7

Site:
position = -39
score = 5.54852
sequence = TGCAACATAATGGTGCA

Site:
position = -52
score = 6.02353
sequence = TGCACCAAATCGGTGCA

Gene: Shewmr7_3763: nitrogen regulation protein
*
Shewanella baltica OS155

Site:
position = -52
score = 5.48659
sequence = TGCACCAGATTGGCGCA

Site:
position = -39
score = 5.76968
sequence = CGCACCATAGTGGTGCA

Gene: Sbal_0267: nitrogen regulation protein
*
Shewanella denitrificans OS217

Site:
position = -79
score = 5.99901
sequence = TGCACCATAGTGGTGCA

Site:
position = -52
score = 5.76968
sequence = TGCACCACAATGGTGCG

Gene: Sden_3457: nitrogen regulation protein
*
Shewanella frigidimarina NCIMB 400

Site:
position = -37
score = 5.66686
sequence = TGCATCATAATGGTGCA

Site:
position = -50
score = 6.10351
sequence = CGCACCAAATTGGTGCA

Gene: Sfri_0321: nitrogen regulation protein
*
Shewanella amazonensis SB2B

Site:
position = -38
score = 6.28406
sequence = TGCACCATATTGGTGCA

Site:
position = -51
score = 6.28406
sequence = TGCACCATATTGGTGCA

Gene: Sama_3426: nitrogen regulation protein
*
Shewanella loihica PV-4

Site:
position = -52
score = 6.33283
sequence = TGCACCAAATTGGTGCA

Site:
position = -39
score = 6.2353
sequence = TGCACCATTATGGTGCA

Gene: Shew_3560: nitrogen regulation protein
*
Shewanella pealeana ATCC 700345

Site:
position = -79
score = 5.97476
sequence = TGCACCATTTCGGTGCA

Gene: Spea_3929: nitrogen regulation protein
*
Shewanella halifaxensis HAW-EB4

Site:
position = -66
score = 5.76968
sequence = TGCACCATAGTGGTGCG

Site:
position = -79
score = 6.04777
sequence = TGCACCACTTTGGTGCA

Gene: Shal_0342: nitrogen regulation protein
*
Shewanella piezotolerans WP3

Site:
position = -79
score = 6.05474
sequence = CGCACCATTTTGGTGCA

Site:
position = -66
score = 5.99901
sequence = TGCACCATAGTGGTGCA

Site:
position = -39
score = 4.80326
sequence = CGTTCCAAAATGGTGCA

Gene: swp_0250: nitrogen regulation protein
*
Shewanella sediminis HAW-EB3

Site:
position = -51
score = 6.33283
sequence = TGCACCAATTTGGTGCA

Site:
position = -38
score = 6.04924
sequence = TGCACCATGATGGTGCA

Gene: Ssed_0283: nitrogen regulation protein
*
Shewanella woodyi ATCC 51908

Site:
position = -51
score = 5.62294
sequence = TGCACTAGTTTGGTGCA

Site:
position = -38
score = 6.2353
sequence = TGCACCATAATGGTGCA

Gene: Swoo_4650: nitrogen regulation protein
nitrogen regulation protein
ntrC
 
Shewanella oneidensis MR-1

Gene: SO_4472: nitrogen regulation protein NR(I)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_0371: nitrogen regulation protein NR(I)
 
Shewanella sp W3-18-1

Gene: Sputw3181_0221: nitrogen regulation protein NR(I)
 
Shewanella sp ANA-3

Gene: Shewana3_0258: nitrogen regulation protein NR(I)
 
Shewanella sp MR-4

Gene: Shewmr4_0257: nitrogen regulation protein NR(I)
 
Shewanella sp MR-7

Gene: Shewmr7_3764: nitrogen regulation protein NR(I)
 
Shewanella baltica OS155

Gene: Sbal_0266: nitrogen regulation protein NR(I)
 
Shewanella denitrificans OS217

Gene: Sden_3458: nitrogen regulation protein NR(I)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_0320: nitrogen regulation protein NR(I)
 
Shewanella amazonensis SB2B

Gene: Sama_3427: nitrogen regulation protein NR(I)
 
Shewanella loihica PV-4

Gene: Shew_3561: nitrogen regulation protein NR(I)
 
Shewanella pealeana ATCC 700345

Gene: Spea_3930: nitrogen regulation protein NR(I)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_0341: nitrogen regulation protein NR(I)
 
Shewanella piezotolerans WP3

Gene: swp_0249: nitrogen regulation protein NR(I)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_0282: nitrogen regulation protein NR(I)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_4651: nitrogen regulation protein NR(I)
nitrogen regulation protein NR(I)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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