Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog YdcR - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 1 1
Leptothrix cholodnii SP-6 4 2
Methylibium petroleiphilum PM1 3 1
Polaromonas naphthalenivorans CJ2 3 1
Polaromonas sp. JS666 2 1
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110 3 1
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0348
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -130
score = 8.64855
sequence = ATCTGATACGGTCGA-(9)-ATCTGCTGCTACCGC

Gene: Daci_2449: Polyferredoxin
 2
Leptothrix cholodnii SP-6

Gene: Lcho_1477: Polyferredoxin

Gene: Lcho_0728: Polyferredoxin
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2474: Polyferredoxin
*
Polaromonas naphthalenivorans CJ2

Site:
position = -98
score = 7.93512
sequence = AACTGATATGGTTTT-(9)-AACTGCATCTTACGC

Gene: Pnap_2096: Polyferredoxin
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_1166: Polyferredoxin
Polyferredoxin
COG2863
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3388: Probable cytochrome c2
 
Acidovorax sp. JS42

Gene: Ajs_2566: Probable cytochrome c2
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_2985: Probable cytochrome c2
*
Leptothrix cholodnii SP-6

Site:
position = -110
score = 7.10299
sequence = CGCTGATCCGATCGA-(10)-ATCTGCACCTGACCG

Gene: Lcho_1322: Probable cytochrome c2
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0754: Probable cytochrome c2
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2095: Probable cytochrome c2

Gene: Pnap_1283: Probable cytochrome c2
*
Polaromonas sp. JS666

Site:
position = -44
score = 7.2904
sequence = ATCTGATGCTTACGC-(9)-ATGTGAGGCATGATT

Site:
position = -68
score = 9.23043
sequence = ATCTGATATGGTTTT-(9)-ATCTGATGCTTACGC

Gene: Bpro_3448: Probable cytochrome c2
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4653: Probable cytochrome c2
 
Verminephrobacter eiseniae EF01-2
Probable cytochrome c2
COG3258
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_3387: Putative diheme cytochrome c-553
 
Acidovorax sp. JS42

Gene: Ajs_2565: Putative diheme cytochrome c-553
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1

Gene: Daci_2986: Putative diheme cytochrome c-553
 
Leptothrix cholodnii SP-6

Gene: Lcho_1321: Putative diheme cytochrome c-553
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0755: Putative diheme cytochrome c-553
 2
Polaromonas naphthalenivorans CJ2

Gene: Pnap_2094: Putative diheme cytochrome c-553

Gene: Pnap_1282: Putative diheme cytochrome c-553
 
Polaromonas sp. JS666

Gene: Bpro_3449: Putative diheme cytochrome c-553
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_4654: Putative diheme cytochrome c-553
 
Verminephrobacter eiseniae EF01-2
Putative diheme cytochrome c-553
Mpe_A0753
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
*
Methylibium petroleiphilum PM1

Site:
position = -46
score = 7.68338
sequence = AACTGATCTGGTTTT-(9)-ATCTGAGCCTTCAAA

Gene: Mpe_A0753: putative transmembrane protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
*
Variovorax paradoxus S110

Site:
position = -68
score = 8.6072
sequence = ATCTGCTCCGGTGAT-(9)-AACTGCATCTGTTTT

Gene: Vapar_4652: putative transmembrane protein
 
Verminephrobacter eiseniae EF01-2
putative transmembrane protein
Daci_5825
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
*
Leptothrix cholodnii SP-6

Site:
position = -69
score = 8.30273
sequence = ATCTGATGCTATCGA-(10)-ATCTGAATCTACCGG

Gene: Lcho_0727: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD