Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BAV2922 - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 2 1
Bordetella bronchiseptica RB50 2 1
Bordetella petrii DSM 12804 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00892
*
Bordetella avium 197N

Site:
position = -95
score = 18.5413
sequence = TAACTGTCATG-(10)-CAGGCCAGTGA-(15)-CAAGTGTATCG-(0)-GTACTGTATCG

Gene: BAV2923: Permease of the drug/metabolite transporter (DMT) superfamily
*2
Bordetella bronchiseptica RB50

Gene: BB1066: Permease of the drug/metabolite transporter (DMT) superfamily

Site:
position = -153
score = 19.03
sequence = CAACTGTCATG-(10)-CAGGCCAGTGA-(15)-AAAGTGTACCG-(0)-GTACTGTACCG

Gene: BB4263: Permease of the drug/metabolite transporter (DMT) superfamily
*
Bordetella petrii DSM 12804

Site:
position = -131
score = 18.7915
sequence = TAACTGTCATG-(10)-CAGGCCAGTAA-(15)-AAAGTGTACCG-(0)-GTACTGTACTG

Gene: Bpet0646: Permease of the drug/metabolite transporter (DMT) superfamily
Permease of the drug/metabolite transporter (DMT) superfamily
PF01810
 
Bordetella avium 197N

Gene: BAV2924: Transporter, LysE family
 
Bordetella bronchiseptica RB50

Gene: BB4264: Transporter, LysE family
 
Bordetella petrii DSM 12804

Gene: Bpet0645: Transporter, LysE family
Transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD