Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog H16_A2655 - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Cupriavidus taiwanensis 8 2
Ralstonia eutropha H16 9 2
Ralstonia eutropha JMP134 9 2
Ralstonia metallidurans CH34 8 2
Ralstonia pickettii 12J 5 1
Ralstonia solanacearum GMI1000 5 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
h16_A2656
*
Cupriavidus taiwanensis

Site:
position = -72
score = 15.4591
sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG

Gene: RALTA_A2148: Riboflavin-specific deaminase
*
Ralstonia eutropha H16

Site:
position = -72
score = 15.4591
sequence = CAACTGTACTG-(13)-CAACTGTACCG-(0)-GTACTGTACCG

Gene: H16_A2656: Riboflavin-specific deaminase
*
Ralstonia eutropha JMP134

Site:
position = -72
score = 15.1189
sequence = CAACTGTACTG-(13)-TAACTGTACCG-(0)-GTACTGTACCG

Gene: Reut_A2344: Riboflavin-specific deaminase
*
Ralstonia metallidurans CH34

Site:
position = -72
score = 14.9657
sequence = CAACTGTACTG-(13)-CAACTGTATCG-(0)-GTACTGTACCG

Gene: Rmet_2508: Riboflavin-specific deaminase
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Riboflavin-specific deaminase
h16_A2657
 
Cupriavidus taiwanensis

Gene: RALTA_A2149: Threonyl/alanyl tRNA synthetase, SAD
 
Ralstonia eutropha H16

Gene: H16_A2657: Threonyl/alanyl tRNA synthetase, SAD
 
Ralstonia eutropha JMP134

Gene: Reut_A2345: Threonyl/alanyl tRNA synthetase, SAD
 
Ralstonia metallidurans CH34

Gene: Rmet_2509: Threonyl/alanyl tRNA synthetase, SAD
*
Ralstonia pickettii 12J

Site:
position = -105
score = 14.9693
sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG

Gene: Rpic_0849: Threonyl/alanyl tRNA synthetase, SAD
*
Ralstonia solanacearum GMI1000

Site:
position = -101
score = 14.9693
sequence = AAACTGTACAG-(13)-AAAGTGTACAG-(0)-GTACTGTACAG

Gene: RS04304: Threonyl/alanyl tRNA synthetase, SAD
Threonyl/alanyl tRNA synthetase, SAD
PF01810
 
Cupriavidus taiwanensis

Gene: RALTA_A2150: Transporter, LysE family
 
Ralstonia eutropha H16

Gene: H16_A2658: Transporter, LysE family
 
Ralstonia eutropha JMP134

Gene: Reut_A2346: Transporter, LysE family
 
Ralstonia metallidurans CH34

Gene: Rmet_2510: Transporter, LysE family
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Transporter, LysE family
PF00892
 
Cupriavidus taiwanensis

Gene: RALTA_A2151: Permease of the drug/metabolite transporter (DMT) superfamily
 
Ralstonia eutropha H16

Gene: H16_A2659: Permease of the drug/metabolite transporter (DMT) superfamily
 
Ralstonia eutropha JMP134

Gene: Reut_A2347: Permease of the drug/metabolite transporter (DMT) superfamily
 
Ralstonia metallidurans CH34

Gene: Rmet_2511: Permease of the drug/metabolite transporter (DMT) superfamily
 
Ralstonia pickettii 12J

Gene: Rpic_0848: Permease of the drug/metabolite transporter (DMT) superfamily
 
Ralstonia solanacearum GMI1000

Gene: RS04305: Permease of the drug/metabolite transporter (DMT) superfamily
Permease of the drug/metabolite transporter (DMT) superfamily
h16_A1735
 
Cupriavidus taiwanensis

Gene: RALTA_A2152: putative endoribonuclease; L-PSP family
 2
Ralstonia eutropha H16

Gene: H16_A2660: putative endoribonuclease; L-PSP family

Gene: H16_A1735: putative endoribonuclease; L-PSP family
 
Ralstonia eutropha JMP134

Gene: Reut_A2348: putative endoribonuclease; L-PSP family
 
Ralstonia metallidurans CH34

Gene: Rmet_2512: putative endoribonuclease; L-PSP family
 
Ralstonia pickettii 12J

Gene: Rpic_0847: putative endoribonuclease; L-PSP family
 
Ralstonia solanacearum GMI1000

Gene: RS04306: putative endoribonuclease; L-PSP family
putative endoribonuclease; L-PSP family
h16_A2661
 
Cupriavidus taiwanensis
 
Ralstonia eutropha H16

Gene: H16_A2661: hypothetical protein
 
Ralstonia eutropha JMP134

Gene: Reut_A2349: hypothetical protein
 
Ralstonia metallidurans CH34
 
Ralstonia pickettii 12J

Gene: Rpic_2105: hypothetical protein
 
Ralstonia solanacearum GMI1000

Gene: RS03532: hypothetical protein
hypothetical protein
aspB
 
Cupriavidus taiwanensis

Gene: RALTA_A2153: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Ralstonia eutropha H16

Gene: H16_A2662: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Ralstonia eutropha JMP134

Gene: Reut_A2350: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Ralstonia metallidurans CH34

Gene: Rmet_2513: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Ralstonia pickettii 12J

Gene: Rpic_0846: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Ralstonia solanacearum GMI1000

Gene: RS04307: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
h16_A2663
 
Cupriavidus taiwanensis

Gene: RALTA_A2154: Glutathione S-transferase
 
Ralstonia eutropha H16

Gene: H16_A2663: Glutathione S-transferase
 
Ralstonia eutropha JMP134

Gene: Reut_A2351: Glutathione S-transferase
 
Ralstonia metallidurans CH34

Gene: Rmet_2514: Glutathione S-transferase
 
Ralstonia pickettii 12J

Gene: Rpic_0845: Glutathione S-transferase
 
Ralstonia solanacearum GMI1000

Gene: RS04308: Glutathione S-transferase
Glutathione S-transferase
 
CRON 2.
PF01810
*
Cupriavidus taiwanensis

Site:
position = -101
score = 13.8205
sequence = GACCTGTATCG-(13)-AAAGTGTACCG-(0)-GTACTGTACCG

Gene: RALTA_A2694: Transporter, LysE family
*
Ralstonia eutropha H16

Site:
position = -91
score = 13.3421
sequence = GCGCCGTATCG-(13)-AAATTGTACCG-(0)-GTACTGTACCG

Gene: H16_A3243: Transporter, LysE family
*
Ralstonia eutropha JMP134

Site:
position = -97
score = 12.9123
sequence = CTGCCGTCACG-(13)-AAACTGTACCG-(0)-GTACTGTACTG

Gene: Reut_A2949: Transporter, LysE family
*
Ralstonia metallidurans CH34

Site:
position = -94
score = 10.9644
sequence = GGTCAGTACCG-(13)-AAAGTGTGCCG-(0)-GTACTGTATTG

Gene: Rmet_3096: Transporter, LysE family
 
Ralstonia pickettii 12J
 
Ralstonia solanacearum GMI1000
Transporter, LysE family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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