Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Daci_0595 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 11 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1 7 1
Acidovorax sp. JS42 5 1
Comamonas testosteroni KF-1 3 2
Delftia acidovorans SPH-1 3 2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1 4 1
Polaromonas naphthalenivorans CJ2 3 1
Polaromonas sp. JS666 12 1
Rhodoferax ferrireducens DSM 15236 6 1
Variovorax paradoxus S110 10 1
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF01810
*
Acidovorax avenae subsp. citrulli AAC00-1

Site:
position = -130
score = 15.108
sequence = GAACTGTGTTG-(10)-CGGCACAGTTC-(15)-TGTCTGTATTG-(0)-GCACTGTAGCG

Gene: Aave_4435: Transporter, LysE family
*
Acidovorax sp. JS42

Site:
position = -125
score = 15.7734
sequence = GCACTGTGCCA-(10)-CGATACAGTGC-(16)-TGACTGTATTG-(0)-GTACTGTAATG

Gene: Ajs_3843: Transporter, LysE family
*
Comamonas testosteroni KF-1

Site:
position = -121
score = 17.6146
sequence = AAAGTGTCAGG-(10)-CAGGCCAGCTC-(15)-AAAGTGTACCG-(0)-ATAGTGTACTG

Gene: CtesDRAFT_1190: Transporter, LysE family
*2
Delftia acidovorans SPH-1

Site:
position = -175
score = 15.4748
sequence = TCACTGTATCG-(10)-CAATACAGAAC-(15)-CAACTGTATTG-(0)-GCACTGTACAG

Gene: Daci_0594: Transporter, LysE family

Site:
position = -142
score = 18.036
sequence = CAAGTGTCAGG-(10)-CAGGCCAGTTG-(15)-AAAGTGTACTG-(0)-CTACTGTACCG

Gene: Daci_3667: Transporter, LysE family
 
Leptothrix cholodnii SP-6

Gene: Lcho_3541: Transporter, LysE family
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
*2
Polaromonas sp. JS666

Site:
position = -92
score = 16.9909
sequence = TAAGTGTGCCG-(10)-CAATACAGTTT-(15)-CAACTGTATTG-(0)-GTAGTGTGCTG

Gene: Bpro_4234: Transporter, LysE family

Gene: Bpro_4244: Transporter, LysE family
*
Rhodoferax ferrireducens DSM 15236

Site:
position = -114
score = 16.9844
sequence = AACCTGTGTTG-(10)-CAATACAGCTC-(15)-CAAGTGTACTG-(0)-CCAGTGTATTG

Gene: Rfer_3726: Transporter, LysE family
*3
Variovorax paradoxus S110

Site:
position = -93
score = 16.3763
sequence = CTTCTGTGTCG-(10)-CAATACAGTTT-(15)-CAACTGTATCG-(0)-GAACTGTAATG

Gene: Vapar_0747: Transporter, LysE family

Gene: Vapar_0743: Transporter, LysE family

Gene: Vapar_0739: Transporter, LysE family
 2
Verminephrobacter eiseniae EF01-2

Gene: Veis_3365: Transporter, LysE family

Gene: Veis_0361: Transporter, LysE family
Transporter, LysE family
PF00892
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4436: Permease of the drug/metabolite transporter (DMT) superfamily
 
Acidovorax sp. JS42

Gene: Ajs_3844: Permease of the drug/metabolite transporter (DMT) superfamily
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6

Gene: Lcho_3540: Permease of the drug/metabolite transporter (DMT) superfamily
*
Methylibium petroleiphilum PM1

Site:
position = -93
score = 15.8271
sequence = GGCGTGTGTCG-(10)-CAGTACAGATC-(15)-ATTCTGTACTG-(0)-TTAGTGTATTG

Gene: Mpe_A0184: Permease of the drug/metabolite transporter (DMT) superfamily
*
Polaromonas naphthalenivorans CJ2

Site:
position = -197
score = 16.3651
sequence = GCCGTGTGCTG-(10)-CAATACAGTTT-(15)-AAACTGTATTG-(0)-GTGGTGTGCTG

Gene: Pnap_0402: Permease of the drug/metabolite transporter (DMT) superfamily
 
Polaromonas sp. JS666

Gene: Bpro_4235: Permease of the drug/metabolite transporter (DMT) superfamily
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3728: Permease of the drug/metabolite transporter (DMT) superfamily
 
Variovorax paradoxus S110

Gene: Vapar_0746: Permease of the drug/metabolite transporter (DMT) superfamily
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0052: Permease of the drug/metabolite transporter (DMT) superfamily
Permease of the drug/metabolite transporter (DMT) superfamily
CtesDRAFT_4179
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4236: antibiotic biosynthesis monooxygenase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
antibiotic biosynthesis monooxygenase
Bpro_4237
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4237: hypothetical protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
Aave_4745
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4745: ThiJ/PfpI family protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A2040: ThiJ/PfpI family protein
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4238: ThiJ/PfpI family protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0744: ThiJ/PfpI family protein
 
Verminephrobacter eiseniae EF01-2
ThiJ/PfpI family protein
Bpro_4239
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4239: hypothetical protein
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
hypothetical protein
COG1167
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4437: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Acidovorax sp. JS42

Gene: Ajs_3845: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
*
Comamonas testosteroni KF-1

Site:
position = -369
score = 15.008
sequence = GAACTGTATTG-(10)-CAATACAGAAG-(15)-TGTCTGTATAG-(0)-GTACTGTAATG

Gene: CtesDRAFT_4335: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Delftia acidovorans SPH-1

Gene: Daci_0593: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Leptothrix cholodnii SP-6

Gene: Lcho_3539: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0186: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0401: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Polaromonas sp. JS666

Gene: Bpro_4240: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3729: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Variovorax paradoxus S110

Gene: Vapar_0745: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0362: Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
Aspartate aminotransferase (AspB-4) (EC 2.6.1.1)
Bpro_4241
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4438: Glutathione S-transferase domain protein
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4241: Glutathione S-transferase domain protein
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3730: Glutathione S-transferase domain protein
 
Variovorax paradoxus S110

Gene: Vapar_0742: Glutathione S-transferase domain protein
 
Verminephrobacter eiseniae EF01-2
Glutathione S-transferase domain protein
phzF
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4439: Phenazine biosynthesis protein PhzF
 
Acidovorax sp. JS42

Gene: Ajs_3846: Phenazine biosynthesis protein PhzF
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4334: Phenazine biosynthesis protein PhzF
 2
Delftia acidovorans SPH-1

Gene: Daci_5876: Phenazine biosynthesis protein PhzF

Gene: Daci_0592: Phenazine biosynthesis protein PhzF
 
Leptothrix cholodnii SP-6

Gene: Lcho_3538: Phenazine biosynthesis protein PhzF
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0187: Phenazine biosynthesis protein PhzF
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0400: Phenazine biosynthesis protein PhzF
 
Polaromonas sp. JS666

Gene: Bpro_4242: Phenazine biosynthesis protein PhzF
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3731: Phenazine biosynthesis protein PhzF
 
Variovorax paradoxus S110

Gene: Vapar_0741: Phenazine biosynthesis protein PhzF
 
Verminephrobacter eiseniae EF01-2
Phenazine biosynthesis protein PhzF
Aave_4440
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4440: Riboflavin-specific deaminase
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4243: Riboflavin-specific deaminase
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0740: Riboflavin-specific deaminase
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_0364: Riboflavin-specific deaminase
Riboflavin-specific deaminase
Aave_4441
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4441: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
 
Acidovorax sp. JS42

Gene: Ajs_3847: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
 
Comamonas testosteroni KF-1
 
Delftia acidovorans SPH-1
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666

Gene: Bpro_4245: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110

Gene: Vapar_0738: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
 
Verminephrobacter eiseniae EF01-2

Gene: Veis_4911: Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
Pyridoxal-5'-phosphate-dependent enzyme, threonine dehydratase (EC 4.3.1.19)
racX
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_2727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
 
Delftia acidovorans SPH-1

Gene: Daci_4503: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0185: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3727: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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