Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CD2285 - Clostridia-2

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 3 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium bartlettii DSM 16795
Clostridium difficile 630 4 3
Clostridium hiranonis DSM 13275
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
azlC
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -280
score = 8.04209
sequence = TAATTGTAT-(3)-ACACAATAT

Gene: CD2286: Branched-chain amino acid transport protein azlC
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00850: Branched-chain amino acid transport protein azlC
Branched-chain amino acid transport protein azlC
CD2287
 
Clostridium bartlettii DSM 16795
 
Clostridium difficile 630

Gene: CD2287: Integral membrane protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00849: Integral membrane protein
Integral membrane protein
 
CRON 2.
CD2285
 
Clostridium bartlettii DSM 16795
*2
Clostridium difficile 630

Gene: CD2285: Transcriptional regulator, GntR family

Site:
position = -41
score = 8.74681
sequence = AAATTGTAT-(3)-GTACAATTA

Gene: CD2253: Transcriptional regulator, GntR family
 
Clostridium hiranonis DSM 13275
Transcriptional regulator, GntR family
 
CRON 3.
racX
 
Clostridium bartlettii DSM 16795
*
Clostridium difficile 630

Site:
position = -108
score = 8.74681
sequence = TAATTGTAC-(3)-ATACAATTT

Gene: CD2254: Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
 
Clostridium hiranonis DSM 13275
Uncharacterized protein YgeA of aspartate/glutamate/hydantoin racemase family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD