Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CBY_0654 - Clostridia-1

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process:
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 4 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium acetobutylicum ATCC 824
Clostridium beijerincki NCIMB 8052
Clostridium botulinum A str. ATCC 3502 3 2
Clostridium butyricum 5521 2 2
Clostridium kluyveri DSM 555
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium tetani E88
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
phzF
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -100
score = 9.62469
sequence = TAATTGTCT-(3)-ATACAATTA

Gene: CBO2035: Phenazine biosynthesis protein PhzF
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Phenazine biosynthesis protein PhzF
COG251 (TdcF)
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO2036: Putative translation initiation inhibitor, yjgF family
 
Clostridium butyricum 5521
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Putative translation initiation inhibitor, yjgF family
 
CRON 2.
CBY_0654
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -38
score = 9.62469
sequence = TAATTGTAT-(3)-AGACAATTA

Gene: CBO2034: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
*
Clostridium butyricum 5521

Site:
position = -39
score = 7.80831
sequence = AAATTGTAT-(3)-AAACAATAT

Gene: CBY_0654: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
Clostridium kluyveri DSM 555
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88
Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
 
CRON 3.
CBY_0653
 
Clostridium acetobutylicum ATCC 824
 
Clostridium beijerincki NCIMB 8052
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1802: Pyridoxal phosphate-dependent transferase, major region, subdomain 1
*
Clostridium butyricum 5521

Site:
position = -92
score = 7.80831
sequence = ATATTGTTT-(3)-ATACAATTT

Gene: CBY_0653: Pyridoxal phosphate-dependent transferase, major region, subdomain 1
 
Clostridium kluyveri DSM 555

Gene: CKL_0439: Pyridoxal phosphate-dependent transferase, major region, subdomain 1
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium tetani E88

Gene: CTC02221: Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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