Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ2 - Comamonadaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 2 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1 3 2
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
COG0346
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -51
score = 8.5378
sequence = ATGAGTGTGCC-(0)-GTGACACTATT

Gene: Daci_5877: Lactoylglutathione lyase and related lyases
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Lactoylglutathione lyase and related lyases
phzF
 
Acidovorax avenae subsp. citrulli AAC00-1

Gene: Aave_4439: Phenazine biosynthesis protein PhzF
 
Acidovorax sp. JS42

Gene: Ajs_3846: Phenazine biosynthesis protein PhzF
 
Comamonas testosteroni KF-1

Gene: CtesDRAFT_4334: Phenazine biosynthesis protein PhzF
 2
Delftia acidovorans SPH-1

Gene: Daci_5876: Phenazine biosynthesis protein PhzF

Gene: Daci_0592: Phenazine biosynthesis protein PhzF
 
Leptothrix cholodnii SP-6

Gene: Lcho_3538: Phenazine biosynthesis protein PhzF
 
Methylibium petroleiphilum PM1

Gene: Mpe_A0187: Phenazine biosynthesis protein PhzF
 
Polaromonas naphthalenivorans CJ2

Gene: Pnap_0400: Phenazine biosynthesis protein PhzF
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236

Gene: Rfer_3731: Phenazine biosynthesis protein PhzF
 
Variovorax paradoxus S110

Gene: Vapar_0741: Phenazine biosynthesis protein PhzF
 
Verminephrobacter eiseniae EF01-2
Phenazine biosynthesis protein PhzF
 
CRON 2.
pdxQ2
 
Acidovorax avenae subsp. citrulli AAC00-1
 
Acidovorax sp. JS42
 
Comamonas testosteroni KF-1
*
Delftia acidovorans SPH-1

Site:
position = -40
score = 8.5378
sequence = AATAGTGTCAC-(0)-GGCACACTCAT

Gene: Daci_5878: Transcriptional regulator, GntR/MocR family
 
Leptothrix cholodnii SP-6
 
Methylibium petroleiphilum PM1
 
Polaromonas naphthalenivorans CJ2
 
Polaromonas sp. JS666
 
Rhodoferax ferrireducens DSM 15236
 
Variovorax paradoxus S110
 
Verminephrobacter eiseniae EF01-2
Transcriptional regulator, GntR/MocR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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