Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NrdR - Shewanellaceae

Properties
Regulator type: Transcription factor
Regulator family: NrdR
Regulation mode: repressor
Biological process: Deoxyribonucleotide biosynthesis
Effector: Deoxyribonucleotides
Phylum: Proteobacteria/gamma
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 64 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Shewanella oneidensis MR-1 5 2
Shewanella putrefaciens CN-32 5 2
Shewanella sp W3-18-1 5 2
Shewanella sp ANA-3 5 2
Shewanella sp MR-4 5 2
Shewanella sp MR-7 5 2
Shewanella baltica OS155 5 2
Shewanella denitrificans OS217 5 2
Shewanella frigidimarina NCIMB 400 5 2
Shewanella amazonensis SB2B 5 2
Shewanella loihica PV-4 5 2
Shewanella pealeana ATCC 700345 5 2
Shewanella halifaxensis HAW-EB4 5 2
Shewanella piezotolerans WP3 5 2
Shewanella sediminis HAW-EB3 5 2
Shewanella woodyi ATCC 51908 5 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nrdA
*
Shewanella oneidensis MR-1

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Gene: SO2415: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella putrefaciens CN-32

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Gene: Sputcn32_2073: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella sp W3-18-1

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Gene: Sputw3181_1939: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella sp ANA-3

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Gene: Shewana3_1969: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella sp MR-4

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Gene: Shewmr4_1916: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella sp MR-7

Site:
position = -202
score = 3.66418
sequence = CCTCACTATCTTGTAT

Site:
position = -171
score = 4.9526
sequence = ACACCATATCTTGTGT

Gene: Shewmr7_2062: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella baltica OS155

Site:
position = -172
score = 4.9526
sequence = ACACCATATCTTGTGT

Site:
position = -203
score = 3.66418
sequence = CCTCACTATCTTGTAT

Gene: Sbal_2059: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella denitrificans OS217

Site:
position = -336
score = 3.66418
sequence = ACTCACTATCTTGTAG

Site:
position = -304
score = 5.35566
sequence = ACACTATATCTTGTGT

Gene: Sden_1952: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -254
score = 3.66418
sequence = CCTCACTATCTTGTAT

Site:
position = -223
score = 4.9526
sequence = ACACCATATCTTGTGT

Gene: Sfri_2133: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella amazonensis SB2B

Site:
position = -126
score = 3.66418
sequence = CCTCACTATCTTGTAT

Site:
position = -95
score = 4.43953
sequence = GCACCATATCTTGTGT

Gene: Sama_1728: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella loihica PV-4

Site:
position = -149
score = 4.9526
sequence = ACACCATATCTTGTGT

Site:
position = -180
score = 3.66418
sequence = CCTCACTATCTTGTAT

Gene: Shew_1946: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella pealeana ATCC 700345

Site:
position = -165
score = 5.21242
sequence = ACACCATATATAGTGT

Site:
position = -163
score = 4.15078
sequence = ACCATATATAGTGTGT

Gene: Spea_2064: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -163
score = 4.15078
sequence = ACCATATATAGTGTGT

Site:
position = -165
score = 5.21242
sequence = ACACCATATATAGTGT

Gene: Shal_2036: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella piezotolerans WP3

Site:
position = -48
score = 5.11547
sequence = ACACCATATATTGTGT

Site:
position = -50
score = 3.91098
sequence = AAACACCATATATTGT

Gene: swp_2478: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella sediminis HAW-EB3

Site:
position = -162
score = 4.15078
sequence = ACCATATATAGTGTGT

Site:
position = -164
score = 5.21242
sequence = ACACCATATATAGTGT

Gene: Ssed_2306: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
*
Shewanella woodyi ATCC 51908

Site:
position = -163
score = 4.15078
sequence = ACCATATATAGTGTGT

Site:
position = -165
score = 5.21242
sequence = ACACCATATATAGTGT

Gene: Swoo_2303: Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), alpha subunit (EC 1.17.4.1)
nrdB
 
Shewanella oneidensis MR-1

Gene: SO2416: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2074: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella sp W3-18-1

Gene: Sputw3181_1938: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella sp ANA-3

Gene: Shewana3_1968: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella sp MR-4

Gene: Shewmr4_1915: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella sp MR-7

Gene: Shewmr7_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella baltica OS155

Gene: Sbal_2058: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella denitrificans OS217

Gene: Sden_1953: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2134: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella amazonensis SB2B

Gene: Sama_1727: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella loihica PV-4

Gene: Shew_1945: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella pealeana ATCC 700345

Gene: Spea_2063: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2035: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella piezotolerans WP3

Gene: swp_2476: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2307: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2302: Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
Ribonucleotide reductase of class Ia (aerobic), beta subunit (EC 1.17.4.1)
SO2417
 
Shewanella oneidensis MR-1

Gene: SO2417: Ferredoxin
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_2075: Ferredoxin
 
Shewanella sp W3-18-1

Gene: Sputw3181_1937: Ferredoxin
 
Shewanella sp ANA-3

Gene: Shewana3_1967: Ferredoxin
 
Shewanella sp MR-4

Gene: Shewmr4_1914: Ferredoxin
 
Shewanella sp MR-7

Gene: Shewmr7_2064: Ferredoxin
 
Shewanella baltica OS155

Gene: Sbal_2057: Ferredoxin
 
Shewanella denitrificans OS217

Gene: Sden_1954: Ferredoxin
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2135: Ferredoxin
 
Shewanella amazonensis SB2B

Gene: Sama_1726: Ferredoxin
 
Shewanella loihica PV-4

Gene: Shew_1944: Ferredoxin
 
Shewanella pealeana ATCC 700345

Gene: Spea_2062: Ferredoxin
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2034: Ferredoxin
 
Shewanella piezotolerans WP3

Gene: swp_2475: Ferredoxin
 
Shewanella sediminis HAW-EB3

Gene: Ssed_2308: Ferredoxin
 
Shewanella woodyi ATCC 51908

Gene: Swoo_2301: Ferredoxin
Ferredoxin
 
CRON 2.
nrdD
*
Shewanella oneidensis MR-1

Site:
position = -79
score = 4.34778
sequence = TGCCTACATATTGTGT

Site:
position = -48
score = 5.18417
sequence = TCACTATATGTAGTGT

Gene: SO2834: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella putrefaciens CN-32

Site:
position = -48
score = 5.18417
sequence = TCACTATATGTAGTGT

Site:
position = -79
score = 4.39855
sequence = ACGCTATATATTGTGC

Gene: Sputcn32_1540: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella sp W3-18-1

Site:
position = -48
score = 5.18417
sequence = TCACTATATGTAGTGT

Site:
position = -79
score = 4.39855
sequence = ACGCTATATATTGTGC

Gene: Sputw3181_2559: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella sp ANA-3

Site:
position = -79
score = 4.28961
sequence = TGCCTAGATATTGTGT

Site:
position = -48
score = 4.99771
sequence = GCACTATATGTAGTGT

Gene: Shewana3_2603: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella sp MR-4

Site:
position = -79
score = 4.38656
sequence = TGCCTAGATATAGTGT

Site:
position = -48
score = 5.51078
sequence = ACACTATATGTAGTGT

Gene: Shewmr4_2441: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella sp MR-7

Site:
position = -79
score = 4.44473
sequence = TGCCTACATATAGTGT

Site:
position = -48
score = 5.51078
sequence = ACACTATATGTAGTGT

Gene: Shewmr7_2511: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella baltica OS155

Site:
position = -80
score = 4.38472
sequence = GCTCTACATATTGTGT

Site:
position = -49
score = 5.02129
sequence = TCACTAGATGTAGTGT

Gene: Sbal_1665: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella denitrificans OS217

Site:
position = -124
score = 4.13406
sequence = GCACAGCATATTGTGT

Site:
position = -93
score = 3.60417
sequence = AgtCTATATgTAGatT

Gene: Sden_1419: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella frigidimarina NCIMB 400

Site:
position = -33
score = 3.98243
sequence = GCGCTATATATAGTGC

Site:
position = -64
score = 4.6859
sequence = ACACTCTATCTTGTGT

Gene: Sfri_2443: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella amazonensis SB2B

Site:
position = -41
score = 4.05811
sequence = GCTCAACATATAGTGA

Site:
position = -72
score = 4.58685
sequence = ACACTACATTTTGTAT

Gene: Sama_1275: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella loihica PV-4

Site:
position = -49
score = 5.21242
sequence = ACACTATATATGGTGT

Site:
position = -80
score = 4.29385
sequence = GCGCTACATATTGTGT

Gene: Shew_2449: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella pealeana ATCC 700345

Site:
position = -50
score = 5.10242
sequence = GCACTATATATAGTGT

Site:
position = -81
score = 3.56417
sequence = gCgCcAcATATtGTGa

Gene: Spea_2619: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella halifaxensis HAW-EB4

Site:
position = -50
score = 5.10242
sequence = GCACTATATATAGTGT

Site:
position = -81
score = 4.07724
sequence = ACGCCACATATTGTGA

Gene: Shal_2692: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella piezotolerans WP3

Site:
position = -80
score = 3.56417
sequence = gCgCcAcATATtGTGa

Site:
position = -49
score = 5.25456
sequence = ATACTATATGTAGTGT

Gene: swp_3165: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella sediminis HAW-EB3

Site:
position = -49
score = 5.10772
sequence = ACACTATATGTGGTGT

Site:
position = -80
score = 4.1969
sequence = ACGCAACATATTGTGC

Gene: Ssed_1600: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
*
Shewanella woodyi ATCC 51908

Site:
position = -49
score = 5.10772
sequence = ACACTATATGTGGTGT

Site:
position = -80
score = 4.1969
sequence = ACGCAACATATTGTGC

Gene: Swoo_3049: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
nrdG
 
Shewanella oneidensis MR-1

Gene: SO2833: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella putrefaciens CN-32

Gene: Sputcn32_1541: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella sp W3-18-1

Gene: Sputw3181_2558: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella sp ANA-3

Gene: Shewana3_2602: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella sp MR-4

Gene: Shewmr4_2440: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella sp MR-7

Gene: Shewmr7_2510: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella baltica OS155

Gene: Sbal_1666: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella denitrificans OS217

Gene: Sden_1420: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella frigidimarina NCIMB 400

Gene: Sfri_2442: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella amazonensis SB2B

Gene: Sama_1276: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella loihica PV-4

Gene: Shew_2448: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella pealeana ATCC 700345

Gene: Spea_2618: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella halifaxensis HAW-EB4

Gene: Shal_2691: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella piezotolerans WP3

Gene: swp_3164: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella sediminis HAW-EB3

Gene: Ssed_1601: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
 
Shewanella woodyi ATCC 51908

Gene: Swoo_3048: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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