Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PdxQ2 - Caulobacterales

Properties
Regulator type: Transcription factor
Regulator family: GntR/MocR
Regulation mode:
Biological process: Metabolite transport; Pyridoxine/pyridoxal homeostasis
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 6 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15
Caulobacter segnis ATCC 21756 3 3
Caulobacter sp. K31 3 3
Phenylobacterium zucineum HLK1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pdxQ2
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -32
score = 8.3975
sequence = CATATTGTCAT-(1)-ATGACAATAAG

Gene: Cseg_3419: Transcriptional regulator, GntR/MocR family
*
Caulobacter sp. K31

Site:
position = -35
score = 9.13327
sequence = TATATTGTCAC-(1)-GTGACAATATC

Gene: Caul_0975: Transcriptional regulator, GntR/MocR family
 
Phenylobacterium zucineum HLK1
Transcriptional regulator, GntR/MocR family
 
CRON 2.
PF01810
 
Caulobacter crescentus CB15
*
Caulobacter segnis ATCC 21756

Site:
position = -97
score = 8.3975
sequence = CTTATTGTCAT-(1)-ATGACAATATG

Gene: Cseg_3420: Transporter, LysE family
*
Caulobacter sp. K31

Site:
position = -86
score = 9.13327
sequence = GATATTGTCAC-(1)-GTGACAATATA

Gene: Caul_0976: Transporter, LysE family
 
Phenylobacterium zucineum HLK1
Transporter, LysE family
 
CRON 3.
phzF
 
Caulobacter crescentus CB15

Gene: CC3221: Phenazine biosynthesis protein PhzF
*
Caulobacter segnis ATCC 21756

Site:
position = -90
score = 7.6927
sequence = CTGATTGTCAC-(1)-GGGACAATAAA

Gene: Cseg_0699: Phenazine biosynthesis protein PhzF
*
Caulobacter sp. K31

Site:
position = -82
score = 7.82146
sequence = TGTATTGTCAT-(1)-GTGACAATGTT

Gene: Caul_4473: Phenazine biosynthesis protein PhzF
 
Phenylobacterium zucineum HLK1

Gene: PHZ_c3278: Phenazine biosynthesis protein PhzF
Phenazine biosynthesis protein PhzF
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD